FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70
Sequences flagged as poor quality0
Sequence length100
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGGGCCGCTGGCGCGCAGACGGCTGCATCGACTACCTCGGGCGCAATG34.285714285714286No Hit
CAGGAACGCTTCCATGTCGGGGTAGCGCGCGATGGCCTGGTCGGTCACCG34.285714285714286No Hit
AGGATGAACAGCGTGCGCTCGATGCGGCCCAACTCGCGCAGGGCGACGGC34.285714285714286No Hit
ACTTCCAGCCGAACTTCGCCTTGCTCTGTGAACTTGAGAGCATTGGACAG34.285714285714286No Hit
GTGTTTGCACGCTCGCACTGTCGCCGAGGCCTACGCTGGGCACTCCCACT22.857142857142857No Hit
GTGCTGGCCGAGGCCCGGCACCCGTTCTCCGTCGTCACCAAGTCCTCGGG22.857142857142857No Hit
CAACAAGACGCCACCTGCCACGCTGTCCGAAGTGTGCGCACAGGTCGACC22.857142857142857No Hit
CCATCAGATCGAGTTCCTGGCGCAGCGCTTCGGTGTAGCCGCGCACGGCG22.857142857142857No Hit
TGCTTGCTGCGGCAGCCATGATGGTGAGCGCCGCGCCGGCACATGCCGAC22.857142857142857No Hit
GCTACAACCGCGCCGCACGCCTGCTCGAAGACATGGAAAAGGCGGGGCTC22.857142857142857No Hit
GGGGGAACCAGCTCCAAAACGTCTGCCAGCCAGTACGCGCTGTTTGTGGA11.4285714285714286No Hit
CTTCACACACTGGGCCACGGCGGCCAATCGCATGGGCATCCCCACCACCC11.4285714285714286No Hit
GCTTGGCGTACGCCTTGAGCGCGGCCGACACCTTGCGCGGACGCGGCTGC11.4285714285714286No Hit
TGATCTCGCGCATCATCGAGGCCAAGCCCGATGACATGCGCATCTTCCTG11.4285714285714286No Hit
CTCGACATGGATGACTACCTCAAGCTCGGCGTCTTTGCCGCGCTCGATGC11.4285714285714286No Hit
GGCCGAGGTGGCCGAGGCTGGCGCGCAGGCCGATCTCGCCGCGGCCCAGG11.4285714285714286No Hit
GCCCAGCAGGCCGAGGGCCGCGCCGGACATCGCCTGCTGCTGGCCCAGAC11.4285714285714286No Hit
GCTCAACATGGTCACCGGTGCGGCTCTCGCCACCACCAATCGGGTACCGG11.4285714285714286No Hit
CTGGTTGACGGCTTCTTCTTCAGCCCCGGCACGTCGCGCACGTCGTAGAA11.4285714285714286No Hit
GGATGTGGTAAACCTCTTGTCCGCCATGGCGGTTGGTGTTCATGATCAGA11.4285714285714286No Hit
GTCCTCGCTGGACTTGACACCGCTGACGCCGATGGCGCCCACGCACTGGC11.4285714285714286No Hit
CGATAATCCGACAGAACCTTCGTCAGATCAGACAGTAGGCCGCCACGGTC11.4285714285714286No Hit
CGATGGATGGCACTGCGGCGAGCAGCTCAATGGCGGTACCCAGCGGTCGG11.4285714285714286No Hit
TTCGAATGGAATGCAAAAGTATGAAATGGAATCGAGTGGAATCGAAAGGA11.4285714285714286No Hit
CCCACAAGTCGCGCCCGACAAGTTCCGGCTGGCGCGGGTGCATGAGGTTG11.4285714285714286No Hit
GTCGCGCGACGCACTCAAGCCCTGCGCCTGCGCCTGCAGGCATCGCGGTT11.4285714285714286No Hit
TCCAAGGAGTACCTTGGCCGGTCCCCCGAGGGGACGGCGATGCTCGCGGG11.4285714285714286No Hit
ATCTCAGATCATCAGGCATTAGATTCTCATAAGGAGTGTGCAACCCAGGT11.4285714285714286No Hit
ATCAGGGGTATCTCCAGGCGGACGGTTTTGCGGGCTATAACCCGCTTTAC11.4285714285714286No Hit
GGTGACGGTCGCGCTGCTGCTCAAGTTCAAGAAGCTGACGGAGCCGGTGA11.4285714285714286No Hit
GCGAGATCATCCCCTGCCCGATGATGGCGTAGGCGCGCGGCCCCAGGCCC11.4285714285714286No Hit
AGCGCAGCCAACGCGCCGCCGCCATGCAGCCGCTCCAACGCTTCGCCCTG11.4285714285714286No Hit
GGTCTACAAGCATCAAATGATGCTTACGCTGAAGATTCGGGATGCTCGAG11.4285714285714286No Hit
GTTAGGGATGGGCGAAACACTCGGGACTTTGTTTGGGCTGGTACTGGCTG11.4285714285714286No Hit
GGTCTGGGGTCGGACGCGCATGCGTGTTTTCATCTTCAATCAGGCGCCAT11.4285714285714286No Hit
GCTTGGAGATGGTCTGGCCGTGGCCGATGGGCAGGGCCGTGTCTTCATAG11.4285714285714286No Hit
CCTGCTCAAGGAGCAGACGGACTGGGCCGCGCTGATCCGCGATGCCAGGA11.4285714285714286No Hit
CCTGAGACGCTTTCCAAATTTCCTCAGGAGTAGCTGGGTTGCGATGTTCA11.4285714285714286No Hit
CCGCAAAAACCGTTGCTGTAGTTTGCTTGATGACATTCGTTTTTACGATA11.4285714285714286No Hit
GGCTGGCCATCCAGCAGCGCGCTGCCGGGCAGCCAGCCGCTGCCCTGGCC11.4285714285714286No Hit
GTTGAGGTTGGCTTCGGTAAGCATTTTCGGTGTCAGACCACGAACTTTAT11.4285714285714286No Hit
GTGCGACACGCCGATCTCGTCCGACACCGCAATCCGCTGCGACCGCCGCC11.4285714285714286No Hit
CCGGTTTGCAGGAAGCGCTGGAGCGCCGTGCCGAGAAGGAAGAAAAGCTC11.4285714285714286No Hit
TTCGTGAACCGTGTGGCGTGGTCTGCCTTGATCTGGCGGCATACTTCCAA11.4285714285714286No Hit
GGGTTGAAATACCCATTTGCGCTGCAATTTCCTGCGCTGTAAAACCACGG11.4285714285714286No Hit
GAACTACTGGACGAGATGGAGGGCCAGCACGTCTCGGCACGCGGGCGGCA11.4285714285714286No Hit
GAAACACGTCTTGTACCAGGTCGGCCAACGCGAAATTTTCCTTTTCTGGC11.4285714285714286No Hit
GGCCTGCACATGGCGATGTTCCGCTTCCTCGGCGCGCGCCACCCGCAAGT11.4285714285714286No Hit
CTGTGGACGCGATACGAAGGTGGGGAACATCACCGACGACTACATTGCAC11.4285714285714286No Hit
GGCCGGTCACCGGCACCCCGGCATCGGGCACGGAGAAGCTCTGCATCGCG11.4285714285714286No Hit
GCTCCTACTGGTACCACTCGCACTCCGGCTTCCAGGAACTCACGGGCATG11.4285714285714286No Hit
ACGGTGGAGCCGGTCGGTGACGGGCTCGCGCGGGACGGTCCCTCGATCCC11.4285714285714286No Hit
ATTACTTATTCCGTAGCTGGACCGACGCCAGTTCGATTGTCGATTATCTG11.4285714285714286No Hit
TCATCGTGCTGATCGCCGTGTCGGCACTGCGCACGCGGAAGGCATCCTTG11.4285714285714286No Hit
ATGCGCACGCGTCGGCATCCGCCGGCCGATGATCGTGACCGACAAGGGCG11.4285714285714286No Hit
GCCAGCACGCTGCTGGTTGCACAACAGGCGGTGCCGCCCGCAGAGTCGTC11.4285714285714286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)