FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70
Sequences flagged as poor quality0
Sequence length100
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCCTGGACCTTGCCAAAGTCGAGGCGGGCTCTATGCCCATCGTGCTCG34.285714285714286No Hit
CCTACGAGACATTGAAACCGATGATCGGCGGCACGCTCAACATCAAGCAC34.285714285714286No Hit
ATCCAGCACCATGATGGACGCAGGCAGCATATGTTCGGGCAGCTTGTGCT34.285714285714286No Hit
ACGACCAGCAGTACCCGATTGCCGATGCGGCCCGCGCCATTCTGGACGGC34.285714285714286No Hit
TGCATTCCCTGATATTTCACCAACAGTTCGGCATGGCGACGGATCATGGC22.857142857142857No Hit
GATATCCAGCAGGCGCCGCCCCGTGCGGGCAAAGGCAATGGTCGGCTGGA22.857142857142857No Hit
GGCCTGGATCATGAACATCAACTTCTGGGGCGTCGTACACGGTACCAAGG22.857142857142857No Hit
TCCAGGATGCGTGCGAGCTCGTGGTCCAGCGTCGTCACGGACAGGTAGAC22.857142857142857No Hit
CTTGTTGTTAGTGGCCGGCAGCGACGGAACATTCCGCCCGTGCGGTAACG22.857142857142857No Hit
ATGCCATCGTCATCCGCATCAAACGGCAGCAACGACGCCGACAGCCCCAT22.857142857142857No Hit
CAGCCAGGCCTTCGTGCAGATGACGCGGCGCATTGCTGAGCAGTGGCGAG11.4285714285714286No Hit
CATGCAAATAGATCTGTAGGATAAAAAGGGGTCCCCAACCCCTGGTCCGT11.4285714285714286No Hit
ACAGCGCGACTTGCGGGTGGCGCGCGCCGAGGAAGCGGAACATCGCCATG11.4285714285714286No Hit
GGCTGCGTGGGCTCCAGCGGCGCGCGCTGGCTGACCGCGCTGGCGTTCGG11.4285714285714286No Hit
ATTGTCCAAGTGCGTATCTCCCGGGCACCTGCGCGCGGCGCGATCTCGTC11.4285714285714286No Hit
GTTGTCGGGGGCATTGCCGGCGGCATGTGTGGCGGCGGCATTGGCGGCTT11.4285714285714286No Hit
GGCGATGATGGCCCCTTCGGCCGCACGATCTGATCGGCTGGCCGGCTGAC11.4285714285714286No Hit
GCCTCCACCTGAGCGGCAATGGCGAAGCAGCGAGTAACTGGTCGGGGGCG11.4285714285714286No Hit
GCCCCCATTGAACGGTCGCCTCACGTGCTTCTGTTGAGCAACCCAGCCAG11.4285714285714286No Hit
GCGTGGTGATGCGTTGGCTGGCGATCCGTCATCGGACCGTGCTGACCACC11.4285714285714286No Hit
ATTCGCAAGTTATTGAAAATGACGCTGGAGTTCGATGACTTCGAAATCCA11.4285714285714286No Hit
ACCCTTGATATCGCGCTCGATGGCGAAGAGTTCGGCGATCCGCACGACCG11.4285714285714286No Hit
TTCCATTAGTGTCCATTCCATTCCAGTTCATTCCATTCGATTCCATTCCA11.4285714285714286No Hit
GTCGGCCGCCACGCCGCAGCGCGAGCTGCTGATGCCGCAGCGCCATCTGC11.4285714285714286No Hit
CGCGGAAGGCCGCGCCGCCGGCCAGTGGAGCCAGTACGCCGAAGTGGCGG11.4285714285714286No Hit
CTGAATTTCGTCGGGCCTATCAACAATCCGTCGTTCAACATCACCGCCAT11.4285714285714286No Hit
GCAGGTGGATCTGCATCGAGCGCCCCAGGCGCCCGATGGCGACGAACACC11.4285714285714286No Hit
GTCTTACGTCAAGCTTGCGCAGAGTGCCATCGCGCCGTTGCTTGCGTCCG11.4285714285714286No Hit
GTGTAGAAGAACTGGATCAGCATCGTCAGGGCTCCATTGAGCGCTCGCGC11.4285714285714286No Hit
AAGCCGGACAGCTTGGTCGGATCGCATGCCAGCGGCTTCATTTGGGTAGT11.4285714285714286No Hit
AGCCACAGCAGGTGCTGCTTCTCTTCGCCGTCGGCCTGCAGCGCCTGGAA11.4285714285714286No Hit
GCTGACGGACGGCCGCTTCTCCGGCGGTACCTCGGGGCTGTCGATTGGTC11.4285714285714286No Hit
ATGTAGTAAAGCCCCAGCTCCCAACTTTCGCTGGTTTCTGGTTTCAGATC11.4285714285714286No Hit
CTGCCGCAGCAGTTCGTAGCCGGGGATGGTGAGCGTCGGGTGCGGCACGC11.4285714285714286No Hit
GCGTGCAGCTGCGTGCCGAGATCCACGCCCAGGCCCTGGTGGCGCTGCCC11.4285714285714286No Hit
GACCTGTGCCTCGTCGATGAACAGGCCCAGTTCGCCCGGCTCGCAAAAGT11.4285714285714286No Hit
CTGCAGCACCGGTGCGTCGGGCAGGGCCTCGGCGAGGCGGAGCTCATCCG11.4285714285714286No Hit
GGCCGTGCCGGAATCGGAACTCGTCAACCGCGCATTCGAGGTCGCCGAGC11.4285714285714286No Hit
ACATTGCGCGGCACGCGCGGCAACCATGGGATCACGCCGATCGGCCGAGT11.4285714285714286No Hit
TTCCACATCTTGCGCTTGTCGATCGCAGCGGCCATGCCGTCGCGCGAGGC11.4285714285714286No Hit
ACCGCTGGGTGGATAAAAGCGGCCTGCTGGATACCCTGCAAAATAACGGC11.4285714285714286No Hit
GGCCAGGTCGATCGACGAACCGCCGCCAATGGCGATCAGCCCGTCGCAGC11.4285714285714286No Hit
CCGCAATCGTTACGCTGCTGCTGCTGGGCGGTAACATCATCTCGCTCATC11.4285714285714286No Hit
TTGCACGCCAGTTGCTGTCAAAAATGCAAATGCCGCGCCCTGTCGATGCC11.4285714285714286No Hit
GGCCACGACGGCGACCCATCCAACGGCCCCAATCCCCAGATACACCTTGC11.4285714285714286No Hit
TGTTCGAACTGGCGGAACATTTCCCGAATTTAAAATATCTGGATATGGGA11.4285714285714286No Hit
GTTGCAGGAATGCCGGGTCGGCGCGCACCACCGGCAAGGTGGCGATGTCC11.4285714285714286No Hit
GGCAGCGGTGAGCTGCTCGGTGAACTGCTCCTGGTTCAGGCGCGCGGCCT11.4285714285714286No Hit
GGCTGCAGCGCCTGGACGGCGCCGCGCCCATCTCGGCCCAGATCGCGCCG11.4285714285714286No Hit
CAATAAGTGATTCCGGCTGAACGCGCTGTGCCACGAGAGCCTCGGCACGC11.4285714285714286No Hit
ATATTTCGCCGCAAGCGCCAACGCATATTCTGATCATTCCGAATATCCTC11.4285714285714286No Hit
GCCGGAGCGTTTCGTTGACGTGTCATGGAATTCAGATGGCTCTTCTGCCC11.4285714285714286No Hit
CGCGACGGCCAGCTGGGCGACGCACGGGTGCACGACATCGGCAACTACAT11.4285714285714286No Hit
GTCGTACACCTCGGTCTGTACGTCTTCCGGTAGACAGATGACGGCAGCTC11.4285714285714286No Hit
TCGGCAGGGTACGCCAGAGCATATTGACCTGACTTTGCAGATACTCTTCG11.4285714285714286No Hit
CCTTTGGCGTCATCTCGATCCACAACATGCCCATCCTCGATGCGATGGGC11.4285714285714286No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)