FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTACTTAACATACTGGAAATTGCCTAACTTAATCATTGCCTAAAGAAGA33.4090909090909087No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC33.4090909090909087Clontech Universal Primer Mix Long (96% over 26bp)
AGCCAAGAGAGTCCAAGATGCCTGTTAAGTTTTGTGGCCTTACATGCACT22.272727272727273No Hit
GATCAAAAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGT22.272727272727273No Hit
TTTTTTTTTTGAGACAAGTTCTTGCTCTGTTGCCCAGGCTGGAGTGTGGT22.272727272727273No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22.272727272727273No Hit
GGCCACATGTGGCCGCAGAGCATTTGAAATGTGGCTACTCCAAATTGGAA22.272727272727273No Hit
GAGCAATAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAATAACATACA22.272727272727273No Hit
GTGCTGGCGCGCAGACGCCTTGGGAACTAGAGGCGGGCAGCCTCGGCGAA22.272727272727273No Hit
CTCCTGGGCCGCCTGGCGGCCATCGTGGCTAAACAGGTACTGCTGGGCCG22.272727272727273No Hit
ATTAAGATGGCTGTATCAGTTCTTAAAATCTGCAGAGCCTGGTTCAAAAT22.272727272727273No Hit
GATTTTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCT22.272727272727273No Hit
GTATCAACGCAGAGTACATGGGGAAGCAGTGGTATCAACGCAGAGTACAT11.1363636363636365Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11.1363636363636365No Hit
GATTTAAGGGGTTAGAGACCCCTCTCGATAAAGTTCCTTTCTCGATAAAG11.1363636363636365No Hit
TTTGAGTTCTGTCCTTTTGAGATGATTTCATTATTCTTGGAGTACTTCCT11.1363636363636365No Hit
ACCAAGCCCTGTGTCACGACGGCAGCGGCTGCAGTCACCAGAAACAATCC11.1363636363636365No Hit
AATTGTAGCTGACGGCAGGCCCCTAAACCCAAAAGTCGGGTTCTACAGGG11.1363636363636365No Hit
GGGAACTTGTGCTGCTGGTCCCAGAGCACGAAGAGGAAGGGCTGCTGCAC11.1363636363636365No Hit
GGCTGGGCCCTGTGGTTCACTCCTGTAATCCTAGCACTTTCGGAGGCCAA11.1363636363636365No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG11.1363636363636365Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGTAAGCAGTGGTA11.1363636363636365Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCACATAAATTCTCATGTCCAAGCCACATCATGGCATATTTGTTATTTCC11.1363636363636365No Hit
CTTACTAGCTCAGTGACACTAAAAACACCTGATGTGACAAAACTGTCCTG11.1363636363636365No Hit
ACTTAGAGGTTAATCAAGAAAGAAGTCCACAACCAGCTGCTGTTCTCACT11.1363636363636365No Hit
CGGTGAATCCTTCTGGTCCTGGACTGTTTTTGGTTGATAGGGTATTAATT11.1363636363636365No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG11.1363636363636365Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
TGAGTATTTTGTTTTCAATTAGGGAGATAGTTGGTATTAGGATTAGGATT11.1363636363636365No Hit
GATTCACAGTTATTTGTCAAACTATCAATGTCATTTTAATGATATTGACT11.1363636363636365No Hit
CACCATATGAGGTAGCTTCTCCTTGACGGTCCGGTGTGGGTCGATCTCAA11.1363636363636365No Hit
GGGCAGTGTACTTGCTGCGATGTTGAACCCTGAACAGCACGCTCAGTTCC11.1363636363636365No Hit
GGCATGAAACTGTGGTTTGCTCCACAGATTTCAGAGCATTGACCGTAGTA11.1363636363636365No Hit
CTGCAGCAGACGCTGGGCATCGCCATCGAGCCCGACAACATGGCGGCGAT11.1363636363636365No Hit
GTAATAAACTGGGGGAACTTAGCAAGGCGTGTTTGTGTAGATTCTTCTTT11.1363636363636365No Hit
TGAACTCATCCTTTTTTGTGGCTGCATAGTATTCCATGGTATATATGTGC11.1363636363636365No Hit
GGCGAGACGAGTGGGAGAAACGTCGTCAGCTTTCATCGACAAGGATGAGT11.1363636363636365No Hit
ATCAAAGACGCCCTCGGCTTACTTCTATTCCTTCTCTCCTTAATGACATT11.1363636363636365No Hit
CTCCAAGACGGCGGTAGCGCCCATCGAGCGGGTCAAGCTGCTGCTGCAGG11.1363636363636365No Hit
GTGGACACTTACTGTCCTCTACCACAGCTACGTGCCAGAGTTGTTTTCCA11.1363636363636365No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
CCTTCAAAAACATGGTCCCTCAGCAAGCCCTTGTGATTCGAAATGGTGAG11.1363636363636365No Hit
GAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG11.1363636363636365No Hit
ATTGCAAAACGGGTGTATTATCCGTGTACTCGTACACTATTTTTTTGTAC11.1363636363636365No Hit
CTTCTGCCCTATCACTGAAAGCAATGATCTCCGTGGGGCACACAAAGGTG11.1363636363636365No Hit
GAGTACATGGGAAGCAGTGGAATCAACGCAGAGTACATGGAAGCAGTGGT11.1363636363636365Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GCGTGGGGCCGGGCAGCTGCAGGAGGCAGATCATCCGGGCTCTGTGCCTC11.1363636363636365No Hit
CCCATTTATATGATGACATTTTTCTCTTGCCATTTTTAGAATCTTCTCTT11.1363636363636365No Hit
GAGTGGCACTGGTAGAAGTTCCAGGAACCCTGAACTGTAAGGGTTCTTCA11.1363636363636365No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTTCCATGTACTCTGCCTGTCT11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
CCCCGGAGCCGCGGCGGGAGAGGAACGCGCAGCCAGCCTTGGGAAGCCCA11.1363636363636365No Hit
GAAGCAGTGGTATCAACGCAGAGTACACGGGAAGCAGTGGTATCAACCTG11.1363636363636365Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGCGCCGCAGCAGCAGCCGCAGCCGGAGCCCGACCCCGAGGCGTCCCGAG11.1363636363636365No Hit
GTGCAGCGCTGCGATCACCGGCACCGGGCCGTGCTGGATCAGGTCGAGCG11.1363636363636365No Hit
ACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTT11.1363636363636365No Hit
GCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
CAGTTAAAGAACAGTCAGTGGGGCCCGGCCTTGTAGCTCACACCTTTAAT11.1363636363636365No Hit
TTCTTGCTTAGTACCATTAGAGATATCGATCAGAATCTTGACGTGCCTGC11.1363636363636365No Hit
GCAGTGTCCTTTTGGAAAGGGAGCTGCCCCAGGCTTTAGTGCAGCTGCCA11.1363636363636365No Hit
TGTAAATGGTGCTGTAATCGCAGTACTTTGGGAGGCTGAGGTGGAAGGAT11.1363636363636365No Hit
GCCGCGTCGCCTCGGGCGGAGAAGTTCGCGAACCCCTCGCCGTGCGCGAC11.1363636363636365No Hit
GATCATTGCTCCTCCTGAGCGCAAGTACTCCGTGTGGATCGGCGGCTCCA11.1363636363636365No Hit
AGGTGGTATCAAACCGTTTCACGATGGCCCGGACGTCGTACCCAAAGTTC11.1363636363636365No Hit
GTTTCTCTATCTCTAAGGGGAGTCTCAAAACCCCAGCTCAAAATACGACA11.1363636363636365No Hit
ATTCAAGGCTTTAAAAGTCATTATTCCTGGGCTTGGTAAGTGAATTTATG11.1363636363636365No Hit
CCTCCCATGAATCAAAATGTTCTTAATGGCATCTAGAATGGTGACTCCTT11.1363636363636365No Hit
GTCTAATAAAAAGAAACAAGTAATTGGAAACAAAATACTGGGTCCTAATC11.1363636363636365No Hit
GACAATGGGAGGCTCCTGGAGAGCACCCGTACCAGCGAGCATAGAATTCA11.1363636363636365No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA11.1363636363636365No Hit
AGAAATACTGAGACTGAATAATTTATAAAGAAAAGAGGATTAATTTACTC11.1363636363636365No Hit
CTTGAGCCGCATGTGACTGGGGTTCTGTTAAAAGGGCAGGCTCCTCCCTC11.1363636363636365No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA11.1363636363636365No Hit
GTGCGCAGGTTGTCCTCAAACCCTCTCCTCACAGGAAAAGGCGGATTGAG11.1363636363636365No Hit
GGGGTAAGCTGTTTAAGTCTCTGGATCCAGGTATCCCTGAGGTCTGCTGT11.1363636363636365No Hit

[WARN]Adapter Content

Adapter graph