FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003672863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003672863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGGGTGTTCCCGGCACACAGCATGTCGTCACGGACGATGCGGACGTC39.375No Hit
GCACTGCTGCCCCCAGGGCTACACGTGTGTAGCTGAGGGGCAGTGTCAGC26.25No Hit
GGTTTTTAATGAAGATACCAGATCCTTGGAGATTTCTCAATCTTACACTA26.25No Hit
CCACAGTACCGTCCCCAATAAACTGCAGCCGAGCTCCCCACATGCTGGAC13.125No Hit
CCTTCAAGGCCACTGGTTGAATGTGAAGTGTGGGCAGGATGATGCCAATT13.125No Hit
GTATCAACGCAGAGTACATGGGGTAACCAAGTTGTGTCCTGTCAGCCGCT13.125No Hit
CAACAAAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATCC13.125No Hit
GTGCTGGAAAGTGAGACAAAGGAGCAAGAAAGCCAAGAGACGGGAGAGTC13.125No Hit
AGGCTATCCAGCGTACTCCAAAGATTCAGGTTTACTCACGTCATCCAGCA13.125No Hit
ACTGGATGCACTTCTGCGGGGGCTCCCTCATCCACCCCCAGTGGGTGCTG13.125No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT13.125No Hit
CTAGGAGATCATCTAAGCAACTCTGGTCATCTTACAGATGAGAAACTGAT13.125No Hit
GCAGATAATGATGCAGGTAATGCTGCTATAGACTCACTGCTGAATTATGA13.125No Hit
GTACATGGGAGCGCCGGCTGCGAGACTGGGGCCGTGGCTGCTGGTCCCGG13.125No Hit
GCTCAGAAGAGAGCAGGGGGCTTAGGACAGGAAGGGGCACTCAGGACGGG13.125No Hit
ACCTGGGGGAGTGCACCAACGTGCTACCCATCCCCTTCCCCAGCTTCCTG13.125No Hit
CCCTTAGTGTCTTGCTGGATATAATAGTACAGGGACTTGCCGTACTTTCT13.125No Hit
GGCTATGGTGTCCCAGAGAGTGAGAGGATATATGATGCCTCATTATGAGC13.125No Hit
CCATGAGCAGGGAGGTGAACCCAGAACCAGTTCCCCCACCAAAGCTGTGG13.125No Hit
ATCGGAGACATCCTGCTGTTCGGGACGTTGCTGATGAATGCCGGGGCGGT13.125No Hit
CTTCAGAGCTAAATCGCCTGTGTTAAAATCCCTTAGTCCACCACTAGATG13.125No Hit
GGGCCTTCAGTGTGCAGGGACGGCACCGAGGAGTCTGAGCCGGGGGCGCG13.125No Hit
TGCTGGAGATGTGCAAGAGTTTGTTCTTCAGCCCTGGCTGCCCGCTTGAG13.125No Hit
CACCTGCACTGGTCCGACTTGCCATATAAGGGCTCGGAGCACAGCCTCGA13.125No Hit
GGAGAAAGTTCCATCATGTCGGAGATCAGAGGAAAACCCATTGAGTCCAG13.125No Hit
GTGCAGTTTTACCGGGTACAAGATCTACCCCGGACACGGGAGGCGCTACG13.125No Hit
AACGGTGCGAGAGTGGCGACAACATACACATCTTGGCAGCTAACGATGCT13.125No Hit
ACTCTGGGGACTTGAGCAAGTTGCTTACTGCTCAGTGCCTCAGTTTCCTC13.125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)