FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003673337

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003673337
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATAATATCAATGTAATTTCGACTTGAATTCCCAAATAAAAGTAAAAAG24.3478260869565215No Hit
ATGATGGTGGAGCCTCGATGGGCCTTTCACCCATATCTCCGCACGTTTCA24.3478260869565215No Hit
CCTTCTCGCCGTGCCACGAACACGACTGCGTGGGATCGATGGCGGGCGTT24.3478260869565215No Hit
ACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTT24.3478260869565215No Hit
CACAGACAGTCTCAGCCAAGATGGCAACCTTGGAAGTCCTGGGGATGCCT24.3478260869565215No Hit
ATTTTAATCATGCCTAAAGTCCCACTTGGGAAGGCTAAGGACCGGAAGCC24.3478260869565215No Hit
TCTGAGGGGCTTCCTTCCCCTCCATAGGGCCAGGCATTTTTTTCTGGATT24.3478260869565215No Hit
GGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCCACCTCCCA12.1739130434782608No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACA12.1739130434782608No Hit
CTTCTATGGCGAATGACAGTGGAAAGCTGTGTGTTGATTTCATGAATGCG12.1739130434782608No Hit
CCGCTACACCATCCATAGCCAGCTGGAGCACCTGCAGTCCAAGTACATCG12.1739130434782608No Hit
ATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCCAAGAAT12.1739130434782608No Hit
TTATTGGTTGCCACAAAACCCAGCCACTCCGCTTTTGGAATCGCATTGGG12.1739130434782608No Hit
GGTATCGGCCGGATCGTCGCCCTTGAGCGAGATCGACCCGATCGACAGCC12.1739130434782608No Hit
CTTCTATGGCGAATGACAGTGGAAAGCTGTGTGTTGATGTCATGAATGCG12.1739130434782608No Hit
GAAAGGCCTGCTGGCCTATTCCACGATCAGCCACCTGGGCCTGATCACCG12.1739130434782608No Hit
GAATCGATCGGAATCACGCCGATTGGCTGATCGCCTCTCTTGTTTGCGTC12.1739130434782608No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT12.1739130434782608No Hit
GAACTGAGCATTACTCAGCAGAGAAGCTGCTTAGAAGGAGGGTGATGCCG12.1739130434782608No Hit
ATCGTGACCAGGGGCGCGCCCTCCTTCCCGGGCGTCGCCGCGATGACGAG12.1739130434782608No Hit
ACACGGCATCACCCCGCAGACCGTCCGCAAGAACGTGGACGATGTGCTGG12.1739130434782608No Hit
TTGGCCAATTGCATTTTTGTTCCACTGCTAACTAGGTTAATGTGAACAGA12.1739130434782608No Hit
CACTCTCCCTTTAAAAGACAGCCCCCTCTAATTGATGCGTCTGGGCTAGT12.1739130434782608No Hit
GGGCATCGCCCTGCCCGAGCGCGTGGCCGAGCAAGGTGGTGAAGGCCGAA12.1739130434782608No Hit
ATTAACTACTTTGTTCTGTTATGATGACTACTGGGTTTTTCAATGAAGTT12.1739130434782608No Hit
GTCCTGAATGGCGACATGAGCCTGGTCGGCCCGCGTCCCATGATGGTCGA12.1739130434782608No Hit
GCCAGGGCCGCGCAGGCGGGCGGAGGTGGGCAGGAAGCGCCACGCCGAGG12.1739130434782608No Hit
GTCCTGGTCGACGGCATGGCGGAGACCGAAGGGCGCGACGTGGAGGCACT12.1739130434782608No Hit
CTCCTACACCATTGGTCACGTCGTTGAGGAAGCTCTCAAGACGTCACGTC12.1739130434782608No Hit
TTGAGGCCCTGCGGATAGACCTCGTTGGGTCCCCAAACCGCGCTATAGCC12.1739130434782608No Hit
GCTTTACGACATCGACCCGCAGGCGACCGCCAAGGCGGCCCGAAACCTGT12.1739130434782608No Hit
GTCTTGCTCTAATAAATACCGAATATCCGTGCCTGGTTTGATTTCTTCAT12.1739130434782608No Hit
ATGCAAGAACTGTACGCCCCAATTGTGGCGCGCAAGTACGCCGAAGACCC12.1739130434782608No Hit
CGCTTGCATCCGCGGCCGGGGGTCTTTATCTGCACCGCTGCACACGCAAG12.1739130434782608No Hit
AAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAATCAGT12.1739130434782608No Hit
ACTGCCCTGGCAAGCGAGGGACTGGATGTGACGCGTCGGGACTCGGAATT12.1739130434782608No Hit
TATTCATTCATGTTTTTGAATGCATAGGGACTTTTTTGTCTACTATACAT12.1739130434782608No Hit
GAAACAAATGACCCCCCGGCTTTTCACTCGCTTCGCTCCGTGCAATTCGC12.1739130434782608No Hit
ACCGGATCCACGGTCAGGTGCTGGTCGTCAACGACCCCTTCTGGGTCCGC12.1739130434782608No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)