FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003673349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003673349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12
Sequences flagged as poor quality0
Sequence length100
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGCGGACTTGTAAGGACCGCCGCTTTCGCTCGGGTCTGCGGGTTATAGC18.333333333333332No Hit
CTCAGAGCCTACCCACCACAAACAGTGGCGTGAGTGCTCAGGATCGGCAG18.333333333333332No Hit
GGTCCCAGATGTCCAGTTCCAGATGCCTGGACCCAGAGTGTGGGGGAAAT18.333333333333332No Hit
AAAAAGAGGTGCATGGGTAAAGTCACAGGGCCATAAAGAATGTTCTATAA18.333333333333332No Hit
GGTTTAGGGCTGGGAAGACCAGTCCAGGAGAGAGGACAGTGACCGTCCTA18.333333333333332No Hit
GTACATGGGGATCCCGGCTGACGTTGGACGACAAAGATGGCGGCAGGGAC18.333333333333332No Hit
ACCCAGCACACCTCAGCGCCTCTGGCTGGCAAGCCAGGAGAAGAAGGTGC18.333333333333332No Hit
CGCCTCCCATGAGGGCCACACGCGCCTTGGCCGGGCCCGGGGCCACGCAG18.333333333333332No Hit
CCTCTGTGTCATGATCGTGAGTTGTCGCAGTGTCTGTACCAATACTCTGG18.333333333333332No Hit
GTGATTGGGTGGCCCTGGGAGCTTGCGGTTCTGCCTCCAACATTCCGATC18.333333333333332No Hit
GCATGAGCCACAGCACCCAGCCTTGCATAGCAGTTTCTTAGGTTACAGCA18.333333333333332No Hit
CCTTCAGGCAGACCGTCTGCAGGGCCTGCTGCTCCTTCAGCAGGGCCACC18.333333333333332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)