FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003673394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003673394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGTAAGACTGATTCAGTATTTGAAAATCAATTAATGTAATCCATCAAAT24.444444444444445No Hit
ATCAAAAAGTGGGCGAAGGACATGAACAGACACTTCTCAAAAGAAGACAT24.444444444444445No Hit
CTCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTC24.444444444444445No Hit
GAAATACACCACTGGACTGGGAAGACAAGAAATCAATGCCACCCTGCATT24.444444444444445No Hit
GCAGAGGTACGTGGTACTAATTTAATTCTAAAGTCACTGACGTTGTGATT24.444444444444445No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTAAAAATGTTACCCAA12.2222222222222223No Hit
ATCATACATAAAAACAGAAACTTTTCTCGAAGTCCTCTCATGGTTCCTGT12.2222222222222223No Hit
TGAACATACCTGCAATGATAGCAGTATAAATAGCGCAATTATAAATTAAA12.2222222222222223No Hit
GAATTGCTTGACTTAGCAAAGTTTCATTTCGGTGACTCTTTATGCACACA12.2222222222222223No Hit
TCCAAACGCAAATTAAGTATTTTGATGAAATTTTAGAATTGGGATATGTA12.2222222222222223No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTACCCAAGCGTACCCCT12.2222222222222223No Hit
CCAGCAGCGCGGGCAGGGTGGTCCCGCTCAGGGGCACGCCCAGCAGGTGC12.2222222222222223No Hit
GTATTTAGCCTCCTTTTACAAGTCTTGAATTAAGGGCCAACAATTTCTTT12.2222222222222223No Hit
GCCCTACAGCCATTGCCAGGCCCATCCATTCAGGCGCGAGGCCCATGCCG12.2222222222222223No Hit
GCGTAGCGATAAACGCCTGGACGCGACCTTTCGCTACAATCACCCCGGTT12.2222222222222223No Hit
TTTCAATTCCATTCTATGATGATTCCATTCGAGTCCATTCGATGATTCCA12.2222222222222223No Hit
GTATGGACAGCTGGAAACAAAGCACATTGCAAATGCAAAATATAATCAGG12.2222222222222223No Hit
GACTGTAGGAGGTTGAATGATGCCACTCTCAGAAGATATGTCTATATCCT12.2222222222222223No Hit
CAGAGATGAACCTTCCTTCAGAAAGAGCAGATTTGAAACACTCTTTTTGT12.2222222222222223No Hit
GAGCAGATAACCCTGCTTATTTGGTGTGGTTAAATCAACTAGCTTCTGCT12.2222222222222223No Hit
GATACCGACAGCGCGATGCGGCAAGGCGGGAGTGCCGTGGAGCAGTCCGT12.2222222222222223No Hit
CCTTAAAGCGCTTGAAATCTACACTTGCAAATTGCACAAATAGAGTGTTT12.2222222222222223No Hit
GCAAACTAACACAAGAACAGAAAACCAAACACTGCATGTTCTCACTCATA12.2222222222222223No Hit
TGACCACCGCGGCGTCGAAGCCGGGCAGCCCGCTGGCCATGGCCCAGACC12.2222222222222223No Hit
GGTCCAGGCCATGAAACCATTTTTCCCTCCTAGGCCTCTGGGCCTGTGAT12.2222222222222223No Hit
TGACGGCGCCTTCGGCCGCCTTCGCCTCGGCGCGCGCTCGATCGAAGCAG12.2222222222222223No Hit
CTCCTTCGTGGATGACTAGCAGCACCGTCCAGTTCGCGACATCGTGCAAC12.2222222222222223No Hit
CTGGATGCTCGCGCAGCAGCATCTCGAGGCGCGGCTGCAGCCAGCCTTCG12.2222222222222223No Hit
ATTCGGACCTCTTTGAGGCCTTCGTTGGAAACGGGATTTCTTCTGTCTAG12.2222222222222223No Hit
CCGCACGACTCGGCTCCCGGAGGACCACACACTTGGCTTGTCTCATGGTT12.2222222222222223No Hit
CCTTGGTCTTGAACCGGGATGCCCAAGTGGCGATGCTCGAAGCTGCTGCG12.2222222222222223No Hit
GGATTCTAGTTTTGCCTCCACCAGAAGTGGAGGGAGCTCTCTGCCCCACC12.2222222222222223No Hit
TCTTCCCAGGGTGTCAGAGCCAACAGTGGGCACAATTTACTCTTCCTGCT12.2222222222222223No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTGCGTTTATACCCATGCGTCCCCAT12.2222222222222223No Hit
AAGACAAATGTTGCATGATTTCACTTATATGAGGTACCTAGAATGGGCAA12.2222222222222223No Hit
TCTGCGGGTGGCACTGCCCACGGTGGGCGGGCGGGCCTCTCTACTCGAAG12.2222222222222223No Hit
GCCCTTCTTCCAGATTTTTCCAAAGGAAAGGCTGTTCCCTTGCTACTTAA12.2222222222222223No Hit
ATATTTTAAGAGGACTAAAATCTTACTTTGCTTTCTCCCTTTACCATCTT12.2222222222222223No Hit
GTTCCCGACCGGCGACGTCGCCACCATCGACGCCGACGGCTACCTGCAGA12.2222222222222223No Hit
GAATGGAATTGTCATCAAATGGAATTCAAAGGAATCATCATCAAATGGAA12.2222222222222223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)