FastQCFastQC Report
Tue 10 May 2022
EGAF00003673789

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003673789
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27303
Sequences flagged as poor quality0
Sequence length140
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA4081.4943412811778924No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT2690.985239717247189No Hit
GTACATGGGAACCCCCACCGGACCTACAACCCGCAGTCCCACATCATCTC790.2893454931692488No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT560.20510566604402444No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG510.18679266014723656No Hit
GTACATGGGTGGCCGTCAGCATCCCGATCATCAAGGCGCTGCGCGAAGGC510.18679266014723656No Hit
CTCATAGACAGACCAAGAAATGGCGGTGGAGGGCATCTGGTAGATGACAC490.1794674577885214No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG470.17214225542980627No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG430.15749185071237592No Hit
GTTTTCAGTCACTGCAAATTTTCTTCCCTCCTCTGGGATCTAAGGATCCA390.1428414459949456No Hit
GTACATGGGAGCTGGCATAAGATTCCATGCCTAGATGTGATACACGTTTC370.13551624363623047No Hit
GTACATGGGGGATCGCGGTGCTGCTGATGTCGGGCTTCTCGTCGGAACTG360.13185364245687287No Hit
GTACATGGAACCGCCGTCGCGCCATCCGCGATTTCGACAGAACCGCGGTC350.1281910412775153No Hit
GTCTATGAGTTCTTCAAGTACTTTCTCACCAAGCGCCAGCTGGAAAATCG340.12452844009815771No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC320.11720323773944255No Hit
GTACATGGGTCCCTGCTCACTCTACTGTCGGAACTTGGTGTCGAACGGGC320.11720323773944255No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT320.11720323773944255No Hit
TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC310.11354063656008498No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT310.11354063656008498No Hit
GTACATGGGAGGCTCCCTGCCACCCCTCACGACCTCTGATGGTCGTTGTG300.1098780353807274No Hit
ATTATTAACTGCGCAGTTAGGGCAGCGTCTGAGGAAGTTTGCTGCGGTTT300.1098780353807274No Hit
GTACATGGGCGTCCGTCGAAGAAGGTCGGACGCCCTGCGTGATGAGATAG300.1098780353807274No Hit
CCTCTGGGATCTAAGGATCCAGGGAGGAGGCTGCCACAGTGAAGCAGAAA300.1098780353807274No Hit
CATTAATGGTGGCTTCAAGCTTTTCCTTATTGGCTCCAGAAAATTCACCC290.10621543420136982No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA290.10621543420136982No Hit
CCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT290.10621543420136982No Hit
GTACATGGGTGTCAATGTGCGACCTGCCGAGGGTAGGGGGGCGGGTGGTC280.10255283302201222No Hit
GTACATGGGCGGGCACGGAGAACATCTACAAGATCTACGGCGAGAGCTTC280.10255283302201222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)