FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003673791

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003673791
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114
Sequences flagged as poor quality0
Sequence length140
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGCGGGGACAGGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCG54.385964912280701No Hit
GTTTAAAGGATCCTGATAAACTAAGCTCTGTGAAGGCAGCAACCACGTCA32.631578947368421No Hit
ACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCG32.631578947368421No Hit
GCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTG32.631578947368421No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA32.631578947368421Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCATTCGTGTCCATTCCATTATTCCATTCTATTCCATTTGATGATGATTC32.631578947368421No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT32.631578947368421No Hit
CTCCCCACCTGGCACTGTCCCCGAGGGGCTCTCGCTTCTGGCGCCAAGCG21.7543859649122806No Hit
CTGTCATTCTTTACAATGTGCATTTGGAGTTGGGGAATTTCTGTAAGCCT21.7543859649122806No Hit
GAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACC21.7543859649122806No Hit
TCCCAGCCCCTGGGCACCAGGGTCAGCAGCTGGGGCGTGTGCTGCTCCAC21.7543859649122806No Hit
GCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAA21.7543859649122806No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.7543859649122806Clontech Universal Primer Mix Long (96% over 26bp)
CTGCTATGCAGCTTTGCCTGGCAAATAAATAGTGGTTTGCTAAATTTCTC21.7543859649122806No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA21.7543859649122806Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAATATAAGGTAAAGAAGAAATTCAAAGTAATCAAATAATCAGGCTGGGT21.7543859649122806No Hit
GCCCAGCCCTGGTCAGTCTTGAGGTCTGTGTTGATGTTAAACACTGGTCA21.7543859649122806No Hit
CTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAG10.8771929824561403No Hit
GGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCAGACCTCAAGGCC10.8771929824561403No Hit
CTCCTGACCTCAAGCGATCCACCTGCCTAGGCATTCCAAAGTGCTAGGAT10.8771929824561403No Hit
GGGCTGCCTGGAGCCCCTGGTATCCCTGGAGAGTGGGGAGAGAAGGGGGA10.8771929824561403No Hit
AATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGA10.8771929824561403No Hit
CTGCATCGGCTTCCGCAACGGCGCCGACGGCCTGGTCCAGATCGCCCTCG10.8771929824561403No Hit
CTTCATAAGAGCACAAGTGGGCATTATATCATCTGCATTACAGATTTCAC10.8771929824561403No Hit
CCATTAGAAAGCTCAAGAAGCTATTTTAAAAGGTGTTTGCATTCTATATG10.8771929824561403No Hit
TTCTTGGTGGGAGTCCGCTTCTTCTGCCGGGCAGCCATGATCTTGCGAAA10.8771929824561403No Hit
CCACTGTCAACATTAGACAGATCAACGAGACTGAAAGTTAACCAGGAATT10.8771929824561403No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.8771929824561403Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCAT10.8771929824561403No Hit
TGTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCA10.8771929824561403No Hit
CTGCCAGACCCTCTGCTGGACAAGCTCGTCCTCCCTGTGCTGCCCGGGGC10.8771929824561403No Hit
ACAGAGACCACCACAAAGATACTCCTCGAGAAGAGGAATCCCAAGACACA10.8771929824561403No Hit
CCCGTGTTGGGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTT10.8771929824561403No Hit
CAGGGTCTTACTCTGTTGCCCAGGCTGGAGTGCAGTGGTACTGTCTCGGC10.8771929824561403No Hit
GGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGT10.8771929824561403No Hit
CTACACCAACTGGTACCGAGGGGAGCCCGCAGGTCGGGGAAAAGAGCAGT10.8771929824561403No Hit
ACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG10.8771929824561403Clontech Universal Primer Mix Long (96% over 26bp)
TTAACACTCTATGTGGGGAAAAAGCAGCTTGTAGAGATTGAGAAGGTTGT10.8771929824561403No Hit
AATCATCGAATGGTCTCGAATGGAATCATCTTCAAATGGAATGGAATGGA10.8771929824561403No Hit
ACCTTTCTCTCTGGCTGCCCTTACCATTTTTTCCTTCATTTCAACTTTGG10.8771929824561403No Hit
ACAACAAAGGGTGAGAACGGGGTCCCCTCATGACCACAATTCCCTCAACC10.8771929824561403No Hit
GTGGTATCAACGCAGAGTACATGGGGGGCGGCGCGAGCGAGGGGCAGAGG10.8771929824561403No Hit
TCAGAGTGGTTACTAACTTCACCTTCTTTCCTCTTGCTGTCATCTGCATT10.8771929824561403No Hit
CTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTT10.8771929824561403No Hit
GTCCTGATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCGATT10.8771929824561403No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG10.8771929824561403No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACCACTGCTTCCCATG10.8771929824561403Clontech Universal Primer Mix Long (96% over 26bp)
TCTGTGTATAGTAACAGTTCTGGTAGTAATTTTGGTAGCTGGGGGGATGG10.8771929824561403No Hit
CCATAGGGTCCTAACCTGTGGTGAGTAAAGAATGACACTCTCCTAGCTAC10.8771929824561403No Hit
GGTAACCAGGTGCTCACTCAGGGCCAGGCGTTGCTGGGCTTCCGGCGCCC10.8771929824561403No Hit
CATTTAAACAGAGGTCAAGCAATAGGCGCCTGGCAGTGTCAAGTCTGAAA10.8771929824561403No Hit
CCCTTGATGAAGCCCTGCGTGGCGGGCAGGGTGTCGAACCTGTCTCTTAT10.8771929824561403No Hit
CTTCTGGGCCTCGGCTGGTGTTTCGCGGCCTCCGGCACCTTCGAAGACGA10.8771929824561403No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG10.8771929824561403No Hit
ACTTAGTATTATACCAGTCACTCATCAATGAGCACCTACTCCATCCTGGT10.8771929824561403No Hit
CTGTCAGGGCCCCCAGCAGGGCCTTCAGGGCCTTCACGGCCCCCACGGCC10.8771929824561403No Hit
GAATATCTGCCAGGGCACTGCTATATAAATCATATCCAAGCATGTCACCG10.8771929824561403No Hit
GGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTATCG10.8771929824561403No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA10.8771929824561403No Hit
CCACTGCTTTCCATGTACTCTGCGTTGATACCACTGCTTTCCATGTACTC10.8771929824561403Clontech Universal Primer Mix Long (96% over 26bp)
GTATCCAGGCGGCTCGGGCCTGCTTTGAACACTCTAATTTTTTCATTAAT10.8771929824561403No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACCACTGCTTCCCAAG10.8771929824561403Clontech Universal Primer Mix Long (96% over 26bp)
GATTTAACAGGTTCATTTTGGTTACTTCCTCCTGAAGCATTTTTAGTTCA10.8771929824561403No Hit
CTATAGAATAGATAATGGATGGAACACGAATAAGTCCAGAAATAGAGGAG10.8771929824561403No Hit
TATTTATTATTATTTTTTTTTTTGAGATGGAGTCTTGCTCTGTTACCCAG10.8771929824561403No Hit
GCTCGAGGGAGCGACGGGCCTCCTCGTCAAACTGAAGTTGCTTAGCTGCC10.8771929824561403No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT10.8771929824561403Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.8771929824561403Clontech Universal Primer Mix Long (96% over 26bp)
GTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGT10.8771929824561403No Hit
CTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACA10.8771929824561403No Hit
CATGGACTACATGTCCCTGTATCAGCAATTTCGCCTGCTGTTCTGTGCCT10.8771929824561403No Hit
TCTCAGGAAAGAGGAAATGCTGTCCTGAACAGCTGTTGAGTTCCGCCCTT10.8771929824561403No Hit
TCCTCACTCTCTGGCAGCATCTGAAGGTTTTCTAGTGTCAGCTGGCCCAG10.8771929824561403No Hit
CTTTGAAGCAATTGTGAATGGGAGTTCACTCATGGTTTGGCTCTCTGTTT10.8771929824561403No Hit
GCTCAATGAGGGGCCATTACTCAAGATTAACGCTCATCAGCGTTATGCCA10.8771929824561403No Hit
AGTTTACAATCTATGATGATGATGATGTGTCTCCATTCCTGGAAGGTCTT10.8771929824561403No Hit
GCTTACCCAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG10.8771929824561403Clontech Universal Primer Mix Long (96% over 26bp)
GCCTATAGCAAGGGGCGGGAGCGGAGCTTTCATTTTGGTTCAACAGAACA10.8771929824561403No Hit
CTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAG10.8771929824561403No Hit
GAACTGGAGCATGATGTCGGTGGGGAGGGCGAGGAGGGCGCGAAGGACTG10.8771929824561403No Hit
CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACT10.8771929824561403No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG10.8771929824561403No Hit
GCCCAATGCCTCGACCAGCTGACAGAGGAGCTGGAATTGGTACAGCATTC10.8771929824561403No Hit
CTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCAAT10.8771929824561403No Hit
CTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCAT10.8771929824561403No Hit
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGA10.8771929824561403No Hit
GAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG10.8771929824561403No Hit
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGGGGGGGGGGG10.8771929824561403No Hit

[FAIL]Adapter Content

Adapter graph