FastQCFastQC Report
Fri 10 May 2024
EGAF00003673926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003673926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116
Total Bases16.2 kbp
Sequences flagged as poor quality0
Sequence length140
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGTTCTCTTTTCTTTGTG32.586206896551724No Hit
CTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGACAGCGAGGCCAGGA32.586206896551724No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG21.7241379310344827No Hit
GTTGGGGGACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAG21.7241379310344827No Hit
GGTTCCCTGAAGGCTGCAGATAGGGAAAACCTAGGTGGAGGTCTATATGC21.7241379310344827No Hit
GGTATCAACGCAGAGTACATGGGGATGATGGTGGTGATGAAGGTGATGGT21.7241379310344827No Hit
GATGGGGAAATGGAGGGAAACAAAGAATTTCAAAGTTCTGTCAGTTTTAT21.7241379310344827No Hit
TAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACA21.7241379310344827No Hit
ACCCCGCCCCGGGCCCCTCGCGGGGACACCGGGGGGGCGCCGGGGGCCTC21.7241379310344827No Hit
GGAAGGATCTGTCCATTGACTTTGTTTTTCATGTGTTTTTCCTTTCTAGT21.7241379310344827No Hit
GTCCCCCTTCCCCAGGGTGGTTTGGTGTTGGTCCTTCTCAACACACACTG21.7241379310344827No Hit
GCTCGGGTTGATTCCATTCCATTCCATTCCATTCCATTCTATTCCATTCC21.7241379310344827No Hit
ATTCCATTCAATGATTCCATTCGAATCTATTCCATGATGATTCCTTTCGA21.7241379310344827No Hit
GCAGCAGGCATCGTGGGAAGGTGAAGAGCTTCCCTAAGGATGACCCGTCC21.7241379310344827No Hit
GCCTTCGCAGTAGCTGGGACTTCAGGCATGCACCACCGTGCCTGGCCAGG21.7241379310344827No Hit
CACCCTGTATTGATGACAAAATACCTTCCAAAGTAGAAAAGTTTCAAGCT21.7241379310344827No Hit
GGCAAAGATTTCATGATAAAAACGCCAAAAGCAATTGCAGCAAAAGCAAA10.8620689655172413No Hit
GTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAG10.8620689655172413No Hit
GGAATAATCAACGGATTGAATCAAATGGAATCATCGAATGGAATCCAAAG10.8620689655172413No Hit
CTGACTTAGAGGCGTTCAGTCATAATCCCACAGATGGTAGCTTCGCCCCA10.8620689655172413No Hit
AGAAAGGGCTGCGGCCCTGCGCCGCACGCCCAGTTGCCAGGGCCCTCAGG10.8620689655172413No Hit
GCCCCAGCCTCCCAAGTAGCTGGGATTACAGGCGCGCGCCTACACGCCCT10.8620689655172413No Hit
ATCTGGAGCTGTCACAGCAGCTAGAATATGAGGAGAAAAATTCCTGGAAA10.8620689655172413No Hit
CTTCTTTCCTTCTTTATCCCTCCCTCCATCTTTCTTTCTCCTTCTTTCTC10.8620689655172413No Hit
ATCTGGGGAAGGGCAATCTAACTAGCAGAAATCCAGTAGACTTCTCCTGC10.8620689655172413No Hit
CTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACC10.8620689655172413No Hit
GGTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATA10.8620689655172413No Hit
GAGGTACTGCCCGTGACGATGCTGGCCGAGGACGATCGCGTCGAGACACC10.8620689655172413No Hit
AGATAAAATTTCTTGAGATCTCAGCTGTTTGGGTGACTGTATATGCAATG10.8620689655172413No Hit
GCAGAGTTCTACATCTTTTTTCTCATTTTAAGCCATTCTCCTTTCTCTTT10.8620689655172413No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.8620689655172413Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCA10.8620689655172413No Hit
CCCACCCTGGGCTGGGCAGCAAGAGGTCTGCTCACCTACTGCACCAGACT10.8620689655172413No Hit
ATTGCGAGATGACGGTAAATGTTGCTACTTATGCTGCATAGGATGGCACT10.8620689655172413No Hit
CTGTAGCCTTGTAGTATAGTTTGAAGTCAGGTAGCCTGATGCCTCCAGCT10.8620689655172413No Hit
GGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTATCG10.8620689655172413No Hit
CCAAATGCCTCGTCATCTAATTAGTGACGCGCATAAATGGATGAACGAGA10.8620689655172413No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG10.8620689655172413Clontech Universal Primer Mix Long (96% over 26bp)
GCATTCCTTTCACGGCGCAAGCTCATCATGGCAGGAGGCCTCGCCCTTGC10.8620689655172413No Hit
TCCCTGTACCAGCAAACATTATTTGGCATTTTAAAGAAGATGGAACTATT10.8620689655172413No Hit
GATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGAT10.8620689655172413No Hit
TTTTTCTTGCCATCATTGTCAGAAATTCAGGGAAGTCAATTGTGCCATTA10.8620689655172413No Hit
AAGGAAGACAGAGCAAATATAATCTTCCTTTTCTACAGTTGTGGGGAAAG10.8620689655172413No Hit
CTTGCCATGTGCGTGGGTCGATCTTGGGAAAGAACGCCAGCACTTTCTTG10.8620689655172413No Hit
CACATATTCTACACTGATGTCTTGAGTTCCTCAAGAAAGATTAGGCTCCA10.8620689655172413No Hit
GTGCTATGAGGGACTGGATTACTTGGTCGGTTTTGGTTGCTGGCTTCCAG10.8620689655172413No Hit
CCAATGAAGGCCTCAAAAAAGTCCAAATATTTACTTGCCGATTCCACAGA10.8620689655172413No Hit
TCCTGATTCCAAAACCTGTCAGAGACAGGTTTTGGAATCAGGATGATGCT10.8620689655172413No Hit
GCTGAGCACCAGCCACCTGCAAGCAAGAAAACGCATTCCCGGAAAGGAGA10.8620689655172413No Hit
CTGCGGCTCCGCGGGGGCATGTAGGCCCGGCTTCTCCTCCCACCATTACT10.8620689655172413No Hit
CCCCGTGACTAAGTACAGGATGTCTAGCTCCAAGGGGATGGTGGAAGAGG10.8620689655172413No Hit
GTAGTTGGAGGGCGTTCTTGGCATTTACAGGCAGAGACCAGAGATGCTGG10.8620689655172413No Hit
GGATTGTATAATCTGAACTCTTTCATGGACAATAACTAAAAATTCTTGAA10.8620689655172413No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAACCTCAC10.8620689655172413No Hit
ATGCATGTATATATGTGTACACACACATGCACACAGACACACAATTGTTA10.8620689655172413No Hit
AGTTCCAGGCCTTCTTTGGTGACTGACACTAAAGTCTTCCCCTCAAATTC10.8620689655172413No Hit
TCACTGATGAGGACTGAGACACCTAGGGAAAGTTTATTAGCAGACAGACA10.8620689655172413No Hit
CAGTACGAGAGGAACCGCAGGTTCAGACATTTGGTGTATGTGCTTGGCTG10.8620689655172413No Hit
ACAAACAGGTTTTTTTGTTTGTTTCACATTGTGTGCTCTGGCTCTAGGCT10.8620689655172413No Hit
GTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTG10.8620689655172413No Hit
GTGCTGGATCCACATACGTAATTATTTCATGTGGCTGCTGCGGTGAATTC10.8620689655172413No Hit
CCTTATACCTCTGGTAGAATTCAGCTGTGAATCCATCTGGTCCTGGACTC10.8620689655172413No Hit
CTAAGGAACAGCATGATGTGTGGACGGAAATTGGAAGTAGCCACTCCATG10.8620689655172413No Hit
ATAAAATTCCTCTTGTTCATGCCCTAATTGATGAAGACCAATGATTGACA10.8620689655172413No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG10.8620689655172413No Hit
GAAAGTTGTTGATTTTTTCTGATGAAAATGGACAGGGTCAGCCAGCATGT10.8620689655172413No Hit
CCCAAGGTGCAGGAGAAGGTGAAGGAGTTCTTGGGGAAGGATCCGGGCAA10.8620689655172413No Hit
CTGTTCTTTCAGCTTCCTTAAGGCTGCAATGTGGCCCTTGGCCAGATCCA10.8620689655172413No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTT10.8620689655172413Clontech SMART CDS Primer II A (100% over 26bp)
ACCTTGCATCCTCTTATCCTGCAGTATGCTTGGATTTAGTCCCTAGCTTC10.8620689655172413No Hit
CTATTTATGTTTAATGAACAAAAAAATTAGTTTCAATGAAAACTTTATTT10.8620689655172413No Hit
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG10.8620689655172413No Hit
CGCAGGAACTCCATCGGCCCCTGGCCCGCGTGCTGGCGAAAGGCCAGCTG10.8620689655172413No Hit
GAGACGGCCGACGTTCGCGCCGGCCGTCTCACGGGCCTTTTCAACAACGC10.8620689655172413No Hit
AGTTTCTGCTTCTTTCCCTCTAAATTCACCAGCTGTCATCCTCCTCCTGT10.8620689655172413No Hit
TTTCCACACTCAGTGCATTTAAAGGGTTTCTCTCCCGTTTCCGGCGGCGT10.8620689655172413No Hit
GACCCCGCCCCGGGCCCCTCGCGGGGACACCGGGGGGGCGCCGGGGGCCT10.8620689655172413No Hit
GACATTGATTCACCACCCATCACAGCCCGGAACACTGGCATCATCTGTAC10.8620689655172413No Hit
CCACCAGGAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAACCTC10.8620689655172413No Hit
TTGAGAAGCAATTAGATACTAGCTATTGAAATTTCAAATCTGCATGTCCT10.8620689655172413No Hit
GCTTATTGATGAAAAATTACTTATAGGCATACTAAAGAAGAGTCAGGCCA10.8620689655172413No Hit
TAGGTGGAGAGTAGTTGCCAAGAAGAGGAGGGAGGTTGTTCAGAATTGCT10.8620689655172413No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTCCGTTGAT10.8620689655172413Clontech Universal Primer Mix Long (96% over 26bp)
GTGGAGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAAT10.8620689655172413No Hit
CGGTCCACCAGACCAAGAAGCTGGGCGACGAGGACATCAAGGCCTTCCGC10.8620689655172413No Hit
GTTTGGACTTCATCTTTCCAAATACCTATGATAGCATATCTATCCTATCC10.8620689655172413No Hit
ACCTAGGCATTACCATTCAGGACATAGGCATGGGCAAGGACTTCATGACT10.8620689655172413No Hit
ATCCCGGAGAAGCCGGTGGGAGCCCCGGGGAGAGTTCTCTTTTCTTTGTG10.8620689655172413No Hit
ACCATATTCAAGGCAGGCCAGGAGCAGTGGCCCATGCCTGTAATCCCAAT10.8620689655172413No Hit
CCCCCAAATGCCACACGCCGCCCCTCTACCGCATGCGAATCTTTGCGCCT10.8620689655172413No Hit
CCCAAGGTGCAGGAGAAGGTGAAGGAGTTCTTCGGGAAGGATCCGCGCCA10.8620689655172413No Hit
GCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAG10.8620689655172413No Hit
GAATCAACCTACTTTTGAAAGAAAAAGCATAGGAAAGAGAAGTTATAAAC10.8620689655172413No Hit
ATCCCTGTGGTAACATTTCTGACACCTCCTGCATAAAACCCAAAAGGTCA10.8620689655172413No Hit
TAATATCCCAGTCCAAACAAGTCCATTTTAAAAGAGTTTTCTGGCATTAC10.8620689655172413No Hit
GTTAACTACTACGTTGACACTGCTGTGCGCCACGTGTTGCTCAGACAGGG10.8620689655172413No Hit
GCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGA10.8620689655172413No Hit
GACATGCATGGCTTAATCTTTGAGACAAGCATATGCTACCTGGTTGATCC10.8620689655172413No Hit

[OK]Adapter Content

Adapter graph