FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674020

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674020
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length140
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATATAATGGAATCCCCATTAGACTGCGGATTTCTCAGCAGAAACCTTAC410.526315789473683No Hit
GGAGAATCCTTGCCTTACTTTTGTAACTCCTACTCTACTGGCAGGCGACA25.263157894736842No Hit
ATTCCATTCTATTCCATTCCATTCCATTCCATTCCGTTCCGTTCCATTCC25.263157894736842No Hit
ATTTTCTACAGTAGCAACCCATTCCTTTCCTTCACTGCTTTTTTCCCAGT25.263157894736842No Hit
GTCCTTGATCAAATGGCAGGGGCGCTTCTGCGCATCCCGGCTGCGGCTGA25.263157894736842No Hit
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTC25.263157894736842No Hit
CCGCGCCCATGCCCTGCATGTTGTCCGCGAAGCCCGGGCCGCCATAGGCG25.263157894736842No Hit
CTCCTCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCG12.631578947368421No Hit
ACGTAAACAAAGTAGAAACAAAAGTGCAGTTGACGCACAAGCCTTCCGGT12.631578947368421No Hit
GGGCGTGAATGCGTCGCCCGACGAGCTCGTGTGGGCCTCCAGCGCCTACG12.631578947368421No Hit
CGGCGGTGCCTTCCTTGAAGACGGTGTCCATGTGCGCGAGGATCAGGATC12.631578947368421No Hit
GATTTATCAATTATGCAAAAGTTCGGAAGATGCCAGAAACTTTCTCAAAT12.631578947368421No Hit
GCACAGCGAGGCACGCTGCAGCATCCCGCCCGACAGCTGCCAGGGCCGCC12.631578947368421No Hit
GGATTACATAGTGCTGACTTCAGTACCAGAATGTATTTCTTTTTTGCACA12.631578947368421No Hit
CCTTTTCAACGGGCACTGGTTCGGACCTCCAGTGGGTGTTACCCCACCTT12.631578947368421No Hit
CATATAAATAATATGATTGCTTTTGCTGACATATTTGCATTTGACTCGAT12.631578947368421No Hit
GAATAGAATCAACACCAAACGGAAAAAAACGGAATTATCGAATGGAATCG12.631578947368421No Hit
GGCTGATGCTACATAGACATAATATTTGAAAAGGATTGGTTTTAGCAGAC12.631578947368421No Hit
ACAATTCCTTCTCAAGTGAGCATGGTTGGTTATATAAATTTTACAAGTGA12.631578947368421No Hit
GCCTGATTCCCTACTCTAAACTCCAGACTTAAAAATCAAACTATGACCTT12.631578947368421No Hit
ACAAATGGTCTATCCATAAGAAAGATTCATATGCTGGTAAGAATGTGTAT12.631578947368421No Hit
CTCGAATGCAATCATCATCGAATGGAATCGAAAGGAATCATCGAATGGAC12.631578947368421No Hit
TCACAGTACATCTAGCCCACTGAAACCCAAAGAAATTAAATATTTTTTTC12.631578947368421No Hit
GTCGTACGTCGACGTGGACGGTCTCGCCCGGCCCGACGGCGTCCCACGAC12.631578947368421No Hit
ATCCAAGGGATGGTAGCCAGGGACATCAAAATGACTTGGGCAGCGGAAGC12.631578947368421No Hit
AGCTACAGACTGATGAGAAGAGAGAGGCCTGATTCAAAGGGATACCTCCA12.631578947368421No Hit
GGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTATCTTTTT12.631578947368421No Hit
CATTATTTCCACATACAAGAGCTGAGATTGAAAAGAAAACAACACACAAA12.631578947368421No Hit
GCTCACTGCAACCTCTGCCTCCCGAGTTCAAGTGACTTTCCTGCCTCAGT12.631578947368421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)