FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length146
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCGGTACCAGCCACTGCAAAAATACACCAAATTGTAAAGACCATCAATG37.894736842105263No Hit
CTGACAAAGTGGAATGAAAGTTCTGAACAATCAGTTCAAAGAAAAGGGTG37.894736842105263No Hit
GTGCATCTGCATGTGGTTTTTCGATTTTTATGGTGATTCATTTTTCTGTA25.263157894736842No Hit
GTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAACCGGGACTACAGGC25.263157894736842No Hit
CTCCAAGTTCGAGGGTTCCGTCTACGTCCTGTCCAAGGACGAGGGCGGCC25.263157894736842No Hit
GTCCGGGCGCACATCATTCCGCTGGAACAGTCGGTTTCCCGGGAAGCATT12.631578947368421No Hit
CTGCTGAACCCCACCTGCTGTTTCAAGGGGGTAGTGATTCTGTCTCTTAT12.631578947368421No Hit
TACAGTGTCTGAAGCAGTAAATGGATTTAACCCCAATCTAATTTTTCTGT12.631578947368421No Hit
CCGTGACCATGCCCCCCTGTTGCGCAAGCTGCAGTGGGGCATTGTCGCGA12.631578947368421No Hit
GTCCGGGCGCACATCATTCCGCTGGACCAGTCGGTTTCCCGGGAAGCATT12.631578947368421No Hit
GAATGGAATGGAATGGAATGGAGTAGAATGAAATTGAATCAACCAGAGTG12.631578947368421No Hit
AAATTCTGGACAGCCGAACCGCCGGATATCAAGATTGCCTGTCGGAGCTC12.631578947368421No Hit
GCCCCCATTCTTTCGTGTGGTGTTTCAAGTTATGCAATCTATGAGAGACC12.631578947368421No Hit
TGCCGCCAGTCATCACCATGACCCTTTACTTTATTATCTTCGGTAACCTG12.631578947368421No Hit
GCATTCTTCTCAGAACCTTCCTCACCACGTCAGTTTCTCCATGTTCCTGT12.631578947368421No Hit
CCCGCTTTTTGATGGGTTTTTTTTTTCTTACAAATTTGTTTAAGTTCCTT12.631578947368421No Hit
ATANTACTTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGTCA12.631578947368421No Hit
GTATGCAGAAGTCTTCAAAACAATGTGTCTCTTAAGAAAAAAAAAAAAGA12.631578947368421No Hit
AGTTATTTCCTTTACTACAGTAGGCCTCAAAGCAGTCCAAATCTCCAATC12.631578947368421No Hit
GTCGTTTCTCTCTGGCTGCCCTTTCCATTTTTTCCTTCATTTCAACCTTG12.631578947368421No Hit
ATCTAAGATAATGTATTTTATCTCAAATAAATACATTCCTTTTTAAAAAG12.631578947368421No Hit
GTTTTCTCACTGTACATTGACTTAGATCTCCTTTAATGACTTTCAAAATC12.631578947368421No Hit
GCCCCCATTCTTTCTTGTGGTGTTTCAAGTTATGCAATCTATGAGAGACC12.631578947368421No Hit
CTTCTTTATGTCTGTACAGATGTGTGTTTGTGTATGTATTTGACTTACAT12.631578947368421No Hit
GAACGGAACGGAACGGAACGGAACGGAACGGAATGGAATGGAATGGAATG12.631578947368421No Hit
ACCCAGTCGTGGGCATGCGGCCAGGCCAGCAGCTCGCGGGTCATGCCACC12.631578947368421No Hit
ATAGTACTTCACACCTGTAATCCCAGCACTTTGGGAGGCAAAGGTGGTCA12.631578947368421No Hit
CATTTCATTCCATTCCACTCGGGTTGTTTCAATTCCATTCTAATCCATTC12.631578947368421No Hit
CGAATGGACTCATCCAATGGAATCAAATGGAATCATCAAATGGAATCGAA12.631578947368421No Hit
GGGTATGCGGCGCGGATGGGTGTCAGTGTCCTGGGGCACGGGCGTCCTTG12.631578947368421No Hit
CTGCACCCACTGTCCTGCACTCACTGTCTGGAAATCCCTAGTGAGAGGAA12.631578947368421No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)