FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38
Sequences flagged as poor quality0
Sequence length146
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGACTAGGATTGCAACCCCTGCCTTTTTTTGTTTTCCATTTGCTTGGT37.894736842105263No Hit
GTGTCATCCGTGAGGATGCCGGCCAGACCCAGGCCGCGGCCCAAGTCCAG25.263157894736842No Hit
AATGACAGAAGGTGTGTCATAAAATCAGTCAGAGACGAGTTGTGAAACAT25.263157894736842No Hit
GGGTGAGAGGACATGCCTATTAGTAACCCCCGTTTATGGCTGGGCAAATG25.263157894736842No Hit
GTGCGGGAGCCCTCGCGGATAGCGAAGCGCAGGCCCTCGTCCATGGCGAC25.263157894736842No Hit
ACATTTCATATTCCTCTTTCCTCTGCGAATGTTGTCAAAGATGGGTAACT25.263157894736842No Hit
GGTTCTTTCTCTGTTGCCCAGGCTGGAGTTTAGTGGCACAATCACGGCTC25.263157894736842No Hit
GTTTAAGTAAATACAGCAAGGTGCAGGCCAGCATGTATAATTAGCTTCTA25.263157894736842No Hit
AATCACTACCCCCTTGAAACAGCAGGTGGGGTTCAGCAGCTGTCTCTTAT12.631578947368421No Hit
GGATTCCATTCGATGATGATTCCATTCAAATACATTCGATAATTCAATTC12.631578947368421No Hit
GTCACACAGTGTGCATATTTTTTGAGCTGTGTTTATGTATATACAATCCT12.631578947368421No Hit
CACACTCCCTCTCCCCTCTCTCTCTGATTTAGCCCAAGGATTGGAAGGCC12.631578947368421No Hit
GCCAATGCCAGGGTGATAATATCCAGGGTGGTCAGATAACAAGGGTGGGG12.631578947368421No Hit
CATTCGGTCAGCATGCCTTCCGGACAGAGCCAGCCGCACCAGGCGCGCCC12.631578947368421No Hit
GAAAAGGAATGAACAAAGCCTCCAAGAAATATGGGACTATGTGAGTAGAC12.631578947368421No Hit
GTCCATTTGAGAAGGTAATGAAGTAATTGTTTGCCAGTGATTGATACCCA12.631578947368421No Hit
CGGAAGACGTGCAGCCGCAGGCCTGGAAGAACAAGGGTGGCATGACCCGC12.631578947368421No Hit
ACGAATACCCACGAATGCACCTGAAATGGCACAAAAAACAGTGAAATTGC12.631578947368421No Hit
GGGTGAGAGGACATGCCTATTAGTAACCCCCGTTTATGGCTGGGCAAAAG12.631578947368421No Hit
CCAGTACCATGCTGTTTTGGTTACTGTAGCCCTGTAGTATAGTTTGAAAC12.631578947368421No Hit
GTCGCCATCGCTCGTACCCCGTCGCTGAGATACGCCAAGGGCAATTCACC12.631578947368421No Hit
ATGTGGGTTGTTGTGAGTAGTAAATGAGACAACATGCAGATGTACTAATT12.631578947368421No Hit
GCTTTTAGGATGTCAAAATTATGGAATAGGAACTGTGGATCCATATTTAC12.631578947368421No Hit
GTTCTATTCCATTCCATTCCATTCCAATCCATGCCATTCCACTCGTGTTG12.631578947368421No Hit
GCCCTGGCCCTGGGCACGGCGGAGCCCGTCACCTTCGTGGGCTGCGACGC12.631578947368421No Hit
CATTCCATTCCACTCGTTTTTACTCCATTCCAATCCATTCCATTCCATAC12.631578947368421No Hit
AATGAATTGGAATGGAATGGAGTAGAATGGAATTGAATCAACATGAGGGG12.631578947368421No Hit
GTTTCAGAGCTGCTCGGTCAAGAGGAAAGTTCAATTCTTGAAGTGGAACA12.631578947368421No Hit
CTTTTTGTAGAATCTGCAAGTGGATATTTGTAGTGCTTGTCTCCTCTATT12.631578947368421No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)