FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44
Sequences flagged as poor quality0
Sequence length146
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGATGTGATCCGGAGTGAGTGCTAATTGGGGGGTGGTGAGGATAGGTA49.090909090909092No Hit
CAGTCCTGTGGGTTATATCAATGCCTAAAGCAGAGATCAAATCAAAGCAT36.8181818181818175No Hit
GTAGAAGATCTGTAGAATCCACGGTATTGCATATGGCAGCCCCACATCTT24.545454545454546No Hit
CTCTTGTAAGGCAGGCCTGGTGGTGACAAAAATCTCTCAGTATTTGGTTG24.545454545454546No Hit
GTCGCCATCGCTCGTACCCCGTCGCTGAGATACGCCAAGGGCAATTCACC24.545454545454546No Hit
GGCCTGTATATCCGCCTCGGTCTCTACCTTGACCAAATCACATCTATATA24.545454545454546No Hit
CACCTCCCTTAGCCTCCTTTCTCTCCTTCCTCTACTGACCCAGTCCCTGG24.545454545454546No Hit
GATTCAACTCTTGCGTGGTCTCTGCCTACTGGGGACATTGTGACATATCT24.545454545454546No Hit
CAAGCGAATGGAGTCATCATGGAATTTCATCGAATGGAGTCATCATCATA12.272727272727273No Hit
AGTCCCCGTCCATGCCGCCGAACTCTTCCGGGAACGGCAGGCCGAACAAG12.272727272727273No Hit
CATTCGGTCAGCATGCCTTCCGGACAGAGCCAGCCGCACCAGGCGCGCCC12.272727272727273No Hit
GGTTGATGTTGTTCCAAAGGCCTTTGAAGTTCTGTTGACTTTTCTTCAAT12.272727272727273No Hit
ACATTAACCAACACAGCATAGTACTGGTACAAAAACAAACACATAGACCA12.272727272727273No Hit
CTGTCTTTTAATTGATGTATTTAGATCACTGACATTTACATGATTACTGA12.272727272727273No Hit
GTTTGATGAAATTCGAGTCCTTTCCAGTACATTTCATTCCAATCCCATCC12.272727272727273No Hit
ATGATTTGGCATGGAATGCAATCGAATGGCATCGAATGGAATGGAATGGA12.272727272727273No Hit
ATCGCAGCGCGTCGACCCGGAGCAGGCGTGCCGGCAGCCCCCCGCCGGCC12.272727272727273No Hit
GATCGTTGGTACGATACGCTTTGGTTAAAACGTTGGACACAGCTCATAAT12.272727272727273No Hit
CAAGAAAGCCTGGCAAACATGCCTGAAATGCCAGCCATATAGTTGAGTGG12.272727272727273No Hit
TTGTGTTGGTGTGTCGGCCGCGGTGGTAGGTGTATAGGGCATGACGCACA12.272727272727273No Hit
GTTCATCTATTAAGTTTTCCTATTATGGCTGGTCATGTCTTTTTAATCCC12.272727272727273No Hit
CCTTTGCCTCCCATAGTGCTGGGATAACAGGCGTGAGCCAACACGCCCAG12.272727272727273No Hit
TATTAGCCCTTTGTCAGATGGATAGATTGCAAAAGTTACTCCCATTCTGT12.272727272727273No Hit
GGAGTGCAGTGGTGCGATCTCGGCTCACTGCATCGTCCATCTCCTGAATT12.272727272727273No Hit
TGATGATTCTATTTGATTCAATTGGTTGACATTTCCATTCGATTCCATTC12.272727272727273No Hit
ATATTAGAGCCAATTCCTAATGTAGATGCCCAAACATAGGAATATTCCAA12.272727272727273No Hit
CGGATCCACCCAGAGGATGTCGACGAGGATACGGTGAAGCAGTGGCTGAG12.272727272727273No Hit
AGCTTAGCAAGTGTGGTTTGTTTTGTACCTGTGTAAATTTGGAAATTTGC12.272727272727273No Hit
GCCGAGAAGCAGCAGCCGAGCGACGACGAGTCCCGCGGGGCGTCGCGCTC12.272727272727273No Hit
AGTTTACAAACTAAGAATAATTTTAATTTAAGGAAACCAAATGCAAAAAC12.272727272727273No Hit
GCTAAAAACAATCGCGAAGCCTACAGCTTCACCTGGGATATGATCGCCGA12.272727272727273No Hit
GGTAACGACCATAAAATTTATAAGCACCAGGATGGTAAATACGATCACGC12.272727272727273No Hit
ATATTCGAGGTAGCGCTCGAGCTTGTCGCGGAATGCTGCGAAAGTGAACG12.272727272727273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)