FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78
Sequences flagged as poor quality0
Sequence length146
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCAGCCCTGTGAGTTAAACTCAGTCGTCACAAAGAGTTTTCTGAGAAT45.128205128205128No Hit
CCTCGGAAGACCGTGCTGTGCCACCTGGGGCTTGCGGAATACCCAATTCG33.8461538461538463No Hit
CTTTTTTGGGTAATATCTTTATCCAAGTTGAGCTCAGCGAGTCATCAGTA33.8461538461538463No Hit
GGGCACCACCTACCAGCCTGCACTTCCCTTTCTCAGAGTTTGGAAGCCCC33.8461538461538463No Hit
TCGCGATCCAGACGGACAGCGCGGGGAACAGGACCATGCACAAAGGCAAG22.564102564102564No Hit
GCGACGGCAAGGGCCTGCGCATCGGCTGGCTCGGCAGCATCTGGCCCGAC22.564102564102564No Hit
CACTTACATTCGCTATAACTTAGGTATTGATCGTCTATCGTATGATAAAA22.564102564102564No Hit
AACGTGCACCGGTTCAGGTTTGGTCGGAGAAAGGGGCGACGAGGGGTGAC22.564102564102564No Hit
GCCGAAGAGGTTTCCGAGAGGACCGTCGCCCATGAAGGCGGCCTGAAGCG22.564102564102564No Hit
TTCAAATTCTGACTAGCCTGTCATGTAGTTTGACCGACCGACCGACCGGC22.564102564102564No Hit
ATGGAATCCAATGGAATGCAACTGTATGGAATGGAATAGAATGGAATGGA22.564102564102564No Hit
CCCATCTTGTCCGCGAACTCGATCACGCCAGACGGGCGGGCCGAGACGCC22.564102564102564No Hit
GAGAGACAGAGAAAGGTATTTTGAGATGCAATTTCCTCATCTCTCAAGTT22.564102564102564No Hit
GAACCACGCAGGCGGCCTTCGACCCGTACGCGGTCGACGTGAGCTTCAAC22.564102564102564No Hit
CGTTAAATTAATTTAGTGGAAATTTTCATTTATCACATCAACCATAAAAC22.564102564102564No Hit
ATACTGGAGAATAATTTTAGTGATCCACCAAATTATCAAAAAACAATTAC11.282051282051282No Hit
CTCCAGGGAGGGAGGGAATCCACAGGAAGCCATGAACTGCTGGTTTCAGC11.282051282051282No Hit
GGCGTGATCGTTGGCGATCAGCTTGAGGCCGGTCGCTTTCAGGAAGCCCT11.282051282051282No Hit
CACGTGCGGCGCCACCGCTGCCACGGTGTCGATGGCGATCTCGACCTCGC11.282051282051282No Hit
GGCGTGGCGGTGGTGCTGAAGGCACCCGGCGCCGACTGGCCGGTGCCGTC11.282051282051282No Hit
GTGTAGAGAAGACCTTAAATGACCTGAGGGAGCTGAAAACCATGAATTTC11.282051282051282No Hit
CTTCAATGTCATTTGAATTTTCAGCACCAGAATTTTTGCCTGATTCTTCA11.282051282051282No Hit
GCCATGGGACCTCACTCACTCATCCCCTGTGGGACCCACTCACTGCCATG11.282051282051282No Hit
GTCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCACGCTCCTGT11.282051282051282No Hit
GAAAAATACAATGAACAAAATTAAAATGCAATATGGGAGCATCAACTGCA11.282051282051282No Hit
ATCAAATGGAATCCTCAATGAATGGAATCGAATGGAATCATCACCGAATG11.282051282051282No Hit
CTGTACATACATGCCACAGTAACCACTCTCAGTCACAACATGACCCTTTG11.282051282051282No Hit
GAACGGAATGGAAAGGAATGCAATGATTTGGCATGGAATGGAATCGAATG11.282051282051282No Hit
CTATGCGCCTAGTCAACCAGATGTGTGCTAGCCCGTCGAGACTGAAAAGC11.282051282051282No Hit
ATTACGAATTGTCTAACAACAACAAAACGCACGTTCGATTTTATTTTAAA11.282051282051282No Hit
ATAATGACCGTTGTAATAACTGATTTGCATAGAAATCATCAACGGATGCT11.282051282051282No Hit
GACCACGTGCGCATCGTCGCGGCGCTGGAGCGCGGCGACCACGCCGCCGC11.282051282051282No Hit
GGTGGCGGGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAA11.282051282051282No Hit
CCGTCACCACGCTGTCGGACGAGGCCCGCGCCAGCACCGAATTGCTGGGC11.282051282051282No Hit
AGCCTTGTCAGATGAGTAGATTGCAAAAATTTTCTCCTATTCTGTAGGTT11.282051282051282No Hit
GGCCTGTCAGTGACCGCCCTGACCGGCGTCGTGAAGGGCCTCGCCGACGT11.282051282051282No Hit
GGCCAGGTCCTCGGTGACAGTGACTCCGCGGGAGCAGAGATGGGACGGGT11.282051282051282No Hit
CGCCAGTGAACCGCCGCGCCCCGTGGCGGAGGCAGCCGTCGAGGCGGCCA11.282051282051282No Hit
ATAATGACCGATGTAATAACTGATTTGCATAGAAATCATCAACGGATGCT11.282051282051282No Hit
ACTTCTTCCCTAGGCTGTTGGCTAACATATTCCAGCTGAGTTTCAAAGGA11.282051282051282No Hit
TATTAGTAGTGAAAGTCAGCTTGATGACTCTGTGAGTCCAAGCTTCAGTT11.282051282051282No Hit
AGGTGATGGCGCGGCTCGACATCGCCGAACGCCGCGTGCCGCAGGACGGC11.282051282051282No Hit
GGAATCTTCCGGAATGGAATGGAATGGAATGGAATGGAAGGAAATGCAAT11.282051282051282No Hit
GCCGAGTTTTCTCCTTTATGTTCAAGAGGGCAGCTGGAGATTCACATTTT11.282051282051282No Hit
CCCTGAACAGCGCGCTGTTTATCCTGCGCCGTTATGTGGAGTACTACCAC11.282051282051282No Hit
TTTAAATTTCAAGTAATTACTATCAAGTAAAATTTAAAATTCAGTTCCTT11.282051282051282No Hit
GAAATTTACTATATGATAAAGGTTGCATCTCAGATCATTGGGGAAAAGAT11.282051282051282No Hit
GGGGTCGGCGGCGGCCTTGGCGAGCGAGATCATGCCGAGGTCGATGCTGT11.282051282051282No Hit
CTGCTGAGAAATCCACTGTTAGTCTGATGGGGGTTTTCTTATAAGTGACT11.282051282051282No Hit
CCAAACATATAATCAAAATATGTATATACTCAGCCAGAGGGCTGCCTGTC11.282051282051282No Hit
GAACATGCATTGCTCACCCTGTTGCTGGTCTACGGGCCACGAGAAGGTGG11.282051282051282No Hit
CTATTTTGGGTAATATCTTTATCCAAGTTGAGCTCAGCGAGTCATCAGTA11.282051282051282No Hit
TTGAAGAACGGCGTGTGACGGCCGCCTTCGTCCTTCGACAGAACGTACAC11.282051282051282No Hit
GCACAGGGCACCCAGGCCAAGGCAGGTGGTCTCCGTTGTACAGGTAGTGA11.282051282051282No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCCTGTCTC11.282051282051282No Hit
CCCGAGGGAGTTGCTCAGACTCATTTGTTTTCTCCAAAATGGAAGCTTCC11.282051282051282No Hit
GAGGTTGAAGTAACCATGGTGATTCATAAAGCAAAACAGGACTATTAGTA11.282051282051282No Hit
CTGTCTAGCAGAATATGAAGAAATCCCGTTTCCAACGAAGGCCTCAAAGG11.282051282051282No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)