FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42
Sequences flagged as poor quality0
Sequence length146
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTGCTGAAAGGGCCAGAGATGCAAGGATTTGGGATACATTTTGAACC24.761904761904762No Hit
CCACACAGCATTGCCTCTGACCAAGACACTCACTTTACGGCTAAAGAATT24.761904761904762No Hit
CTTTTTTGCAACAATAAATAAATACAGTCAAAAGTTTTCTGTGAGACTCT24.761904761904762No Hit
CTTAAAGGTGTGTACATCATAATGACTGTTCAGTGAACAGATAGCAAAGC24.761904761904762No Hit
GGCCAACATCATGAAACCCTGTCTCTACTAAAAATACAACCATTAGCCAG24.761904761904762No Hit
ACAGAGAGTAATGTGCTATAGACACATGATGAATTTAGGCCAATCTTTCA24.761904761904762No Hit
CTCAAGGGATCTTCCTGCCTCAGCCTCCCAGGGCGCTGGGATTACAGGCG12.380952380952381No Hit
ACCTTGTTCAAGGAGGTAAACGTTAGGCTCTGCCTTGTAGGGTTAGGAAT12.380952380952381No Hit
GGTGAAAACAGATGAACAAGAAGTAATCAACTTTTTATTAACAACAGAAA12.380952380952381No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT12.380952380952381No Hit
ATTTTATTGAATGTTTTTCAAACATTTTGTTAGTTATTTTAGGAGAACTA12.380952380952381No Hit
CTGCTGGTGGAAATGTAAAATTGTACAGCTGTGTTGAATAACAGCCTGAC12.380952380952381No Hit
GAGCGTGGACTTCGACGACCTCATCGGCATGCCGCTGAAGCTGCTGTACG12.380952380952381No Hit
CTCAAGGGATCTTCCTGCCTCAGCCTCCCAGAGCGCTGGGATTACAGGCG12.380952380952381No Hit
GATTTATTAGCAAAGCCAGTTCAGGAACAAGATCACCATGGTGAGAAAGG12.380952380952381No Hit
GGTGGAACTCATGGCATAATGTGTCGTTCGTATAATCTACACCCCCTAAG12.380952380952381No Hit
ATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATA12.380952380952381No Hit
CCTCGAATCACAAGGACTCTGACATGCTGAGCTTCACCGAGATCGCCCTC12.380952380952381No Hit
ATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAAT12.380952380952381No Hit
TACCTTTTCCCTGAAATGGGAAGTCCCTCCTGACTCTGGGCTGATCCAGT12.380952380952381No Hit
GCCTAAAGGCAGGCAGTTACAGGGTTTTTGATTTCTCCGATTTTATAGGG12.380952380952381No Hit
TATAAAATCTAGGGAGAAGCATTCTCAGTAACTTCTTTGTGATGATTGCA12.380952380952381No Hit
GTATATATAATAGCAAACTACTGTAACTTAGGACAGGCATGCTATAAACT12.380952380952381No Hit
ATATTTTAAAACTTGAAAATCTGTCAGACAGTACATCAAAAAAATATGAC12.380952380952381No Hit
GGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTTCGA12.380952380952381No Hit
AGTTTCAACCTAGCTTCTGTTTCCATTACTAGGTAGGTCAGGTGCACTGA12.380952380952381No Hit
GTTTCATCTTTGCCCCCTTGAATGAGATCCAGTCAATTGAATTTATCAGT12.380952380952381No Hit
GTCGAGAACGCACCGGACCCGGCAGAAGTGCCGAGCTCTTCCAGCCAATG12.380952380952381No Hit
GCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTG12.380952380952381No Hit
CTCTCAGAATTAGCCAGCTCTAGGGAAGATAGTCTCTTTCTGGGTCTGTA12.380952380952381No Hit
CTATACAGTAGCCATGAAAAATCTGTAAACAGTTAAGAAAAACAATTCCA12.380952380952381No Hit
ATCTTAAACAGTTTGTGAAAAAAATGTAGAACCTTTCATTCCTTGTTTGT12.380952380952381No Hit
AGAACTATCTACAAGATTTGTCAATTAGCAGGTGTCTGCATAGTACCTTG12.380952380952381No Hit
CTTTTGACTTTATGTTCTTCATCCTGGGCACACAGGTGAGCTCCCAAAGT12.380952380952381No Hit
GGCCAGTTGTGCATCGCGTAGACGGCGTCGACCGGGAAGCGGTCGAACAG12.380952380952381No Hit
CCATGAGTGACTCTGAACTTGATTTTTGTTGTAACAGCCCTCACATTGTA12.380952380952381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)