FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42
Sequences flagged as poor quality0
Sequence length146
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGTTTTGTTTATGTACATAAAATGTACCACAGCCATCCAGATTTGAAGC24.761904761904762No Hit
GGCTCCTCTTACCTTTAAGTCAACAGGCTAAGAAGGGAGTTACAGTGTTG24.761904761904762No Hit
GCCACCACACCCGGCCACAGTTTCGTTTTAACATCTGTTAATCCAAAAAA24.761904761904762No Hit
CTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGGAGGGGAACCACCC24.761904761904762No Hit
CTTCAGTTCCAACTTGAACTGCAGCTTCAAAGAATGACACGCCAGCGCGG24.761904761904762No Hit
GAACGAGACCCTGTCTCAAAAAATAAATAACATAAAATAAAAAAGCTTTA12.380952380952381No Hit
GGAGATTGAGACCATCCTGACTAACACGGTGAAACCCCGTCTCTACTAAA12.380952380952381No Hit
GTTTTCAAGGCTCATCTATATCATACAGCATGTATCAGTAGTTTATTTCC12.380952380952381No Hit
GGGCAAAATTGGCCAAGAATATAATTGGACTGTTATGACCAATAAAAACG12.380952380952381No Hit
GTCTCCCAGACAATGTCTTAAAGAAGAGAAGCAGGAGGAAAGTGAAATCT12.380952380952381No Hit
CTGGGTCATTCAACTATGTATGTGTTAAATCATTAAACCTCACAATAAGG12.380952380952381No Hit
GGGGGTTACCCCAGTGATTGCCTGGCTGACCGCGAGCTGCGGCTCATCTC12.380952380952381No Hit
TCTTGGGTAAGATGGTCCTGCAGCTATCCAAAGAGCCTTCTGCCCGTCTG12.380952380952381No Hit
GGGGTCACGCCATTCCCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAG12.380952380952381No Hit
TTATTCAAGCTTACTAATTCTTTCTTTTGCCAGTAAAAATTTACTGTTAG12.380952380952381No Hit
GCACGAGACCCTGTCTCAAAAAATAAATAACATAAAATAAAAAAGCTTTA12.380952380952381No Hit
GGACAAAATTGGCCAAGAATATAATTGGACTGTTATGACCAATAAAAACG12.380952380952381No Hit
GGGCGTGGGCGGGCCGGGTGGGGTTTCCGGTGTTGGGTCAATTTAAGCCG12.380952380952381No Hit
CTACTACGTTACATACTGATCCAGCTAACCTTGCCTTTCAAATTCCTGCT12.380952380952381No Hit
GCCTTGCATGATGGTGAAAAGGACAAGTTTGGGACATCACAGACTCCATT12.380952380952381No Hit
GGGTAGGCACACGCTGAGCCAGGCAGTGTAGCGCGCTTGCAGCCCCGGAC12.380952380952381No Hit
GCCATATGAGGCCCATGGAGATCCTGAGCTATGTGTCTCGTTCCTCTTGA12.380952380952381No Hit
CTTGAAAGTGAAAGAAACATCATGTTCCATAATACATTCATTTTCTAATC12.380952380952381No Hit
AAATGTTTCTCATCTGAAAAAAAAAAGTTGGACATAGATTGTATATAAAT12.380952380952381No Hit
GGGTAGTTCCGTATGAAAGCGCGCGATTCTTCGCGCCGCCGATCGAAAGG12.380952380952381No Hit
GCTGCTGGCGGTGCCGCCGGGCTTCACCGCCTGCCATGCGAGCCACAGCA12.380952380952381No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTTGAGCAGAAGGG12.380952380952381No Hit
CTGCGCGCCGACATGGACGCGCTGCCCATGCGGGAGGACAACGTCTTTGC12.380952380952381No Hit
GAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAG12.380952380952381No Hit
GGTGGAGCGGTAGTTCTGCTCCAGCTTGATGACCTTGAGCTTCGGATAGT12.380952380952381No Hit
GTTGCTGTCTAATATTTTGTGTTGACACCTATAAAAATAGTCATGAAGAA12.380952380952381No Hit
AGCAGAATACTTTGATGGACCAGTTCTTTGAGGGAAATTATATCGCAGAG12.380952380952381No Hit
GATATTTCCTTTTTCAACATAGGCCTCAAAGCGCAGCAAATGTCCACTTC12.380952380952381No Hit
CCATTTATTTTTAAATGAACGTATACCGTATTTCCATAACAAACAAAAAA12.380952380952381No Hit
CATTAGAGTCCAGCAGCAGAAACAATGCCCAACCAAATGTTGCAGAAGTA12.380952380952381No Hit
GGGTGTTCATATTTCAAAACCTTTTTTTATACCTTGTAACTGATAAAATT12.380952380952381No Hit
CCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGG12.380952380952381No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)