FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGCCCGCGGGCCGCGCCTCGGTCACGGTGTAGCTGCCCGGTGCGAGG43.2520325203252036No Hit
CGGCTGTCGCGCCGCTGGGTGCGCGAAGTGCCGCGCGCCGCAGGTGCCGG32.4390243902439024No Hit
TGTCCTGTTCTTTTGACTAATCATTTCAAGATCTGAAAAATACAGAGTCC21.6260162601626018No Hit
TCATAATGGGCCTGCATGAGCTTCTCACTCTAGATTTCAAGCTTCTGAAG21.6260162601626018No Hit
TCATCGAATGGACTCGAATGGAATAATCATTGAACGGAATCGAATGGAAT21.6260162601626018No Hit
GTATAGATTTGAGAGGAACCAAACAAAATAATTATTTTAGGAAGATCAGT21.6260162601626018No Hit
CATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGG21.6260162601626018No Hit
CTTTATTTCTTTCTCTTGCCTGATTGCCTTGGCCAGAACTTCCAACACTA21.6260162601626018No Hit
GCAATGACATGGACAGGTGAGACTGCAGAAATCCTCAAACAGTGCAGTTG21.6260162601626018No Hit
GAGTAACTGAGGGTTGTGCAATATGCAATGGCAACACTGAAGAAGGAACC21.6260162601626018No Hit
ACTCTCTACCATCTAATAGGCCTCAGTGTGTGTTGTTCTCCTCCTGTCTC21.6260162601626018No Hit
CAATAGATGCAGAAAAGGCCTTTGACAAAATTCAACAACGCTTCATGCTA21.6260162601626018No Hit
CCCCTGCACTCAGGTTGATTCCATTCGATTCCATTCCATTCCATTCCATT21.6260162601626018No Hit
GAATCATCATCAAGTGGAATCAAATGGAATCATCGAATGGAAACGAATCA21.6260162601626018No Hit
AAAGAAGTCACCTCTTGTCTCTTTGTACAATATTAAAATTTTTTTCTTGT21.6260162601626018No Hit
ACAGAGAGAGGACCAAAGGTAACATGATACAGCCTCTCAGAGAGGGTTCA21.6260162601626018No Hit
CACCTGTAATCCCAACACTTTGGGAGGCTGAGGCGGGTAGATCACCTGAG21.6260162601626018No Hit
ACCACCAGCTGCCTTCGTTGGCGCGCGCAGGCTTCACCGACGAGAGCACC21.6260162601626018No Hit
GTGTCTATTTCACTGGGCAAATGATAGTTTTGTCCCTTGAGTCTGCATTT21.6260162601626018No Hit
GTTCTTTATGGTTCGCAGCTATTGCAGGTGTATGGTTATTCTGCTCCGGA21.6260162601626018No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGTGACAGAGAATCTCGGTT21.6260162601626018No Hit
CTGTAACACACACAGTCAGTAGGAGCCTGAAATCCTGGCCATCTACTGCC10.8130081300813009No Hit
ATTTGAGCATGCACACAATAGGTGAAACATATCAAATATATGTACTTATA10.8130081300813009No Hit
GCCCTCCTTCACGTCGACCAGCAGCCCCTTGTCGAAGGTCTCGTGGCGCA10.8130081300813009No Hit
GTACTCTCTGAGCCCAATATACAGAGAAAGGAGGAAAAAAGCTAGAATTC10.8130081300813009No Hit
ATCTTGGCTTTTGTTGCCATTGCTTTTGGTGTTTTAGACATGAAGTCTTT10.8130081300813009No Hit
CACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCAT10.8130081300813009No Hit
GAGCTGGAGGATAATCACCGCCACCACACTAGGGCACTCATTGTGTGCCT10.8130081300813009No Hit
CTGCAGGGCGGATTCGGCCAGGCCAGGAACTGTCTCTTATACACATCTCC10.8130081300813009No Hit
TGTGGTTTTTGTCACCGAAATCTTCCTGGAGACAAATTTAACATTGACTA10.8130081300813009No Hit
GTGGATACTTGTCTTGGTTTCTTTTTGTTGCACATAGATTCAGCTGGCAT10.8130081300813009No Hit
GGTTAGAAGAATGAGTGTAGCATGCTGTCTACCAGAATCTAAAGGGACTG10.8130081300813009No Hit
GGTTTGGGCTGAAAAACCTGCTAGCTCCAAGTATAAATCTGGGAGGACAG10.8130081300813009No Hit
AGTTTGAATTAATAGATTTTAAATTTGTAGATTTTAAATTTGTAGATTTA10.8130081300813009No Hit
GAAGTATACAGGCTTACTAATGAGAATCTGCTGAAGGAGAGAACTTAACA10.8130081300813009No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.8130081300813009No Hit
GGTTGGGGTTGATGGCGCCGAACACGTCGCCCGACTTGATCATGTCGAGG10.8130081300813009No Hit
ACTCCATTCCATTCCATTCTATTCTTTTCCATTATAATCTATTCCATTCC10.8130081300813009No Hit
GGATTAAAGACCTAAATGTCGATCTTAAAACTATAAAAACCTTGGAAGAT10.8130081300813009No Hit
CCCCTTGATCCTGCTGGCCGGCTTTCTCTTCCTGCTGGGACTCGTGCTGG10.8130081300813009No Hit
GGGTCTGGCTCTGTTGCACAGGCTGGAGTGCAGTGGCAAGATCTTCACTC10.8130081300813009No Hit
TTTGTGATGTGTGCACTCAACTGTCAGAATTGAACCTTGGTTTGGAGAGA10.8130081300813009No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.8130081300813009Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTTCCAGGATGGGTAGCAAGTCATTTTGGCTTGCACTCTGCTGGAGAACA10.8130081300813009No Hit
TTTCCAGGATGGGTAGCAAGTCATTTTGGCTTGCACTCTGCTGGAGTACA10.8130081300813009No Hit
GTCGGGATCTCCCCCGGGCGGGGCTTGTAGGGAAGGTCGGACGCCACCTC10.8130081300813009No Hit
CTTTATTTCTTTCTCTTGCCTGATTGCCTAGGCCAGAACTTCCAACACAA10.8130081300813009No Hit
GTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGT10.8130081300813009No Hit
GATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGAAGCG10.8130081300813009No Hit
TTCAGGTCCTTTGCCCATTTTGAAATCAGCTTATTTGTTTTCTTGCTATT10.8130081300813009No Hit
CTCTTTTTGTAGAATCTACAAGTGGATATTTTGAGAGCATTGAAAATTTC10.8130081300813009No Hit
GAAAGAGCTCTTCGCAGCCGAACGTCATTTCCGCTGCGCTACTGGGACCA10.8130081300813009No Hit
AACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAG10.8130081300813009Clontech Universal Primer Mix Long (96% over 26bp)
GTGTTTTAGACATGAAGTCCTTGCCCATGCCTATGTCCTGAATGGTATTG10.8130081300813009No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.8130081300813009Clontech Universal Primer Mix Long (96% over 26bp)
ATTATGATTCATTTCGTGTTCATTCTATGGTTCCACAGGTTTCCATTCGT10.8130081300813009No Hit
CAGGAGTGGAGCCTGCGGCTTAATTTGACAACACGGGAAACCTCACCCGG10.8130081300813009No Hit
GTATTAGCCTGGGGAATGTGCAGCTGAGTAAACTCTTTGGTGTGGCATGG10.8130081300813009No Hit
TCCTAGAACCAGGCGACCTGCGACTCCTTGACGTTGACAATCGAGTAGTA10.8130081300813009No Hit
ATCTTTGAAGATGGCAGGCCAAATCCGTAGCTTTCGGTTTCGCCCTGAGC10.8130081300813009No Hit
GCGCTGCTTGCGCTGGCCGGCGACCGCCGTGGTGCAGCTGGTGCGCGGCC10.8130081300813009No Hit
TCCCTGTCTTGTGCCAGTTTTCAAAGCGAATGCTTCCAGTTTTTGCCCAT10.8130081300813009No Hit
GCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCG10.8130081300813009No Hit
CTTTTACACTCACTGCAGGAAAAGTCAACCTCTGCAATCTTTCAGACACT10.8130081300813009No Hit
TTCCTGCCTTCACCTCACTGGGCCTCCCATCCCCATTCACACACAAGGGG10.8130081300813009No Hit
TTCTGTGAGGTGTCCCTGCCCTGGGGGCTGGGTGGCTGTTCTTCCTTTCT10.8130081300813009No Hit
GAGAACTTCCCCAATCTAGCAAGGCAGGCCAACATTCAAATTCAGGAAAT10.8130081300813009No Hit
AGCTGGAACTGCAGGCATGCACCACCACGCCTGGCGAATTTTTAAAAATT10.8130081300813009No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGTGACAGAGAATCGCGGTT10.8130081300813009No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCA10.8130081300813009Clontech Universal Primer Mix Long (96% over 26bp)
GGTGGGCGCCAAGCGCCACGTTCTCGAGCACGCTGCGCTGGCCGAGCAGC10.8130081300813009No Hit
CTGGAGCTCCTTGCTACATTTAAAGCCCAATTCACAGGGCATGCAACAGA10.8130081300813009No Hit
GACCCGGCGGGGGGGACCGGCCCGCGGCCCCTCCGCCGCCTGCCGCCGCC10.8130081300813009No Hit
TATGTATCATGCAAATAGTAACCATAAGACAGCAGAAAAGGCAATCCCAG10.8130081300813009No Hit
CCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCCGCCGGCGCCCCGCCG10.8130081300813009No Hit
GTATACATCAAATGCACCATGTTTTTAAATATTTTCTTTTTCCTATGCTT10.8130081300813009No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG10.8130081300813009No Hit
GTTTTAAGCGGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGT10.8130081300813009No Hit
GAAAGTCATTGGTAGCTTGATAGGGATGCCATTGAATCTGGAAATTACCT10.8130081300813009No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTGATAAGGAGT10.8130081300813009No Hit
CCCCCCCGCCTCACCGGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTT10.8130081300813009No Hit
GGCCAGGCGGGTCCCCTTTTATTCTCTTGAGATTTAAATATTAAGTATAA10.8130081300813009No Hit
TGCATGCGGTGTCGGAGGCATTGCCGACGAGCCTGTTGGCCGCCTGCAGC10.8130081300813009No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC10.8130081300813009Clontech Universal Primer Mix Long (96% over 26bp)
AGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTG10.8130081300813009No Hit
ATGTTAGCCAGGCGTGGTGGCACATGCCCATAGTCGCAGCTACTCTGGAG10.8130081300813009No Hit
CAGGAGAACAGAACACGTTGTGCGAAGGGTTATCTTGACACAGTATCTTT10.8130081300813009No Hit
CTCAACTTCTGTACGTTGTACTAAGTCACCGATATAGTGAATTGTTTCTG10.8130081300813009No Hit
AGCTGGAACTATGTCCTTTGAACTACTCAGGAGCAAGGTTAGACTTCCAC10.8130081300813009No Hit
TACAGTACCTGGCCCCCTTAACCTTTCTAGCCTCCTCTGTTATTACCCTC10.8130081300813009No Hit
GAGCACAGATACAAAGGTGAGGTTAGAGCGAAAGTTTAATAAGCAAAAGA10.8130081300813009No Hit
GTCTGGACGTGGTCCGGGTGCTCTCCGGGGTGGGGCTGCGCCTCCTGCGG10.8130081300813009No Hit
ATGCGGCGGCGCCCGAGGGTGCGCTGCAGGGTGATTTGCATCGTGGGGTC10.8130081300813009No Hit
TTACAGGTGTGAGCCACCACACCCAGCCTCTTGTATCTTTTTGATAGGAG10.8130081300813009No Hit
CTCTTCGTGCGCGAGTACGGCACCAACAATTTTCCCGACTGCTCCAACAT10.8130081300813009No Hit
ATACTGAAGAGGGTGTTTCGCAAGATTACCAGATGTACAAAGACTTGGTC10.8130081300813009No Hit
CCATTCGTTCCCATTCCATTCAATTCCATTCCATTCAATTCCATTCCATT10.8130081300813009No Hit
GCCTCAGCCTCCCAAAGTGCTGGGATTACAAGCACTGTCTCTTATACACA10.8130081300813009No Hit
CTTTTATTTATTTATTTATTTAGAGACAGAGTTTTGTTCTTGTTGCCCAG10.8130081300813009No Hit

[FAIL]Adapter Content

Adapter graph