FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences123
Sequences flagged as poor quality0
Sequence length146
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGCCCGGCACGCCCCAGGGCGGCGGCAACGTCATCACCGGCGTGAC43.2520325203252036No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32.4390243902439024No Hit
TCATCGAGATGTCGTTGTTGGCCACCAGGCCGCCGAAGCGCTTGCTCACG32.4390243902439024No Hit
AATGACAAAAACCACATGATTATCTCAACAGATGCAGAAAAGGCCTTCGA32.4390243902439024No Hit
GGAAGGGCAGCGACAGCGCGCCGACGCGCTTCATCTTTCTGGCGAGCGAG21.6260162601626018No Hit
GGTTTAGCTCTGTCACCCAGGCTGGAGTGCGGTGGCACAATCATAGCTCA21.6260162601626018No Hit
CAATGATACCATTCGATTCCATTTGATGATGATTTCAATCAATTTTATTC21.6260162601626018No Hit
GATTCTAAAACCCTGAAAACTAGAAAAATTCATAATTAAGAATTCTGCCA21.6260162601626018No Hit
GAATGGAATGGAATGCAGTGGAATGGAATCAAACCTAGTGCAATGGAATG21.6260162601626018No Hit
GTTACTCAGCATCATTCACATGCAGAGTATGATATCCACAGTGTCGTGCC21.6260162601626018No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.6260162601626018Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTC21.6260162601626018No Hit
AGATTAAAGTTAAGGTTCCCTTTAGCTGGCCAGGTCTGTTCATTCCTGAG21.6260162601626018No Hit
GATCAAGTGTTTTTATGGTCAGTTCTCCCAGTTTGGCTCTCACCTCCTAG21.6260162601626018No Hit
CTTTTATATTATTCGATGTTTCAAAGCGGTTTTTTTTTTTCCATCACAAT21.6260162601626018No Hit
TCTCCTGCCTGATTGCCCTGGCCAGAACTTCCAACGCTATGTTGAATAGG21.6260162601626018No Hit
GAGGAGAACAACACACACTGAGGCCTATTAGATGGTAGAGAGTCTGTCTC21.6260162601626018No Hit
CTGCAACCTCCACCTCCTGAGTTCAAGCGATTCTTCTGCCTCAGCCACCC21.6260162601626018No Hit
CAAATCTGACCATGTCATTCCCCTGTCCTAAGTTCTCGTTGGCTCCTCTT21.6260162601626018No Hit
GTGCTAAACGCATGCGCATATTCAAATAATTGCTACGATTATCAAAATAG21.6260162601626018No Hit
ATTACTGATATTCAATGAAGGCTTTTTATGAGCTAGGCACTGTTTTAAGT21.6260162601626018No Hit
CCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATG21.6260162601626018No Hit
ACATAATTTCCTCTAAAGTATGTTTAAACAAATAAACAGATGAAAAGTTC21.6260162601626018No Hit
TTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAA10.8130081300813009No Hit
CCTCTAAGAACCAGAGACCAAGAATCAGAAGCCTCCCAAGAGTGTATTCT10.8130081300813009No Hit
GTCCCCAGAAGTCTGATCGTTAATCCTTATGTCACAAAATAACCTATGAA10.8130081300813009No Hit
GTATATATACACATACATACACTCGAAAGACTGCAAATCTGCCTCCCAGC10.8130081300813009No Hit
CGGGGACACCGGGGGGGCGCCGGGGGCCTCCCACTTATTCTACACCTCTC10.8130081300813009No Hit
TTGGTATAATGGTTCCTGAGCAATTAGCAACTGTAGAAGGAAAAGAATTC10.8130081300813009No Hit
GTGTAAGCAGCTACTCTTTATGCATTACCTCGTTTAATCCTCTCAGCTAC10.8130081300813009No Hit
ACCGTTATTAGTGTTGTGGTTATTCCGCATGGAGCCCAACCCCTTGTGTG10.8130081300813009No Hit
TGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCCTGTCTCTTATACACA10.8130081300813009No Hit
CAAAAAGAGTGTTTCCAACCTGCTCTATGAAACGGAAGGTTCAACTCTGT10.8130081300813009No Hit
GATACTCGAACTCCACGCGCTGACCCGGCTCGGCCACCGGCCCGAAGTGC10.8130081300813009No Hit
CCTGTAATCCCAGCACTTTGGGAGGCCGAGACAGGTGAGTCACCTGAGGT10.8130081300813009No Hit
AACCGCATGAAGACCAAGCACCCCGGCATGAAGCTGGTGGGACGCGCAGC10.8130081300813009No Hit
CTTCAGCGGCGTCTATCCGCAGGCCAGCCCGGGCGGCTGGCAGATCCTCG10.8130081300813009No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.8130081300813009Clontech Universal Primer Mix Long (96% over 26bp)
CTATTGATCCGGAAGAAGCAATTCGTCGTGCAGCAACAATTTTAGCAGAG10.8130081300813009No Hit
GGGCAGCACCTTCCACCAGGGCCGCTGATGTCCCTTTCCCATGGTATGGC10.8130081300813009No Hit
GGCCGGGCAGCAACTGATCCTGGTCGCGGGCGTCGAAGAACTCAGACATA10.8130081300813009No Hit
CAGTCGCCCTGTTCTTGAGGTCTCTTTTCTCTACTCCATGGTTCTCAATT10.8130081300813009No Hit
TCATATCTTGCGTTAAGTACCCGCCCTCAATTCGAACGCTTCGGTCGGCG10.8130081300813009No Hit
ACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCAC10.8130081300813009No Hit
GTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCCCCGGTGTCCCCGCGAGG10.8130081300813009No Hit
GAATGGAATAGAATGTAATGGACTGCAATGGAATGGACTCGAATGGAATG10.8130081300813009No Hit
GTGTTAACTGTATGAGTCAAACTGAAAATGATTATTAAAGTGGGAAAAAG10.8130081300813009No Hit
CTCACAGAGTTCAACCTTTGTTTTGATACAGCAGTTTGGAAACACTCTTT10.8130081300813009No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.8130081300813009No Hit
ATGTAATAGCCACTAACCACATGTGGCAATTGAGCACTGGATTTGAGTTT10.8130081300813009No Hit
CCCGGTGTCCCCGCGAGGGGCCCGGGGCGGGGTCCGCCGGCCCTGCGGGC10.8130081300813009No Hit
ATATTGGTCCCCACTCTCTTCTTGCTTGTAGAGTTTCTGCTGAGAGATCA10.8130081300813009No Hit
GAGCTACTACGAAGGTTAAATCTACAAATTTAAAATCTACAAATTTAAAA10.8130081300813009No Hit
GTACCATTCCTTCTGAAACTATTCCAATCAATAGAAAAAGAGGGAATCCT10.8130081300813009No Hit
TACTGGTCCTGCCCGGGGGTTGGGGACACCTGCTATAAACTCACAGACCT10.8130081300813009No Hit
GTCGAGGAGAGCCACACTGGTGCGTTCCTGGCTGAGATCCTCTCGTCCGA10.8130081300813009No Hit
TCAATAGCGGCAGGCCGCGCACCAGCTGCACCACGGCGGTCGCCGGCCAG10.8130081300813009No Hit
GAGCTCAGCACGGTGGAAAAAAGTCTCACTTTTGAGAAGCTGTGAGTTTC10.8130081300813009No Hit
CAATGGAATGGGATGGAATGGTATGGAATGGATAGTAATGGACTGGAGTG10.8130081300813009No Hit
GAGTAGTTTTTTTTTTTTTACTAAAGTAATAATTTTGGTGTAAAAGTATA10.8130081300813009No Hit
ATTGTCCCTGTTTGCAGATGACATGATTGTATATCTAGAAAACCCCATTG10.8130081300813009No Hit
GTGCCCTGCTGACACTGACCTTTGTGTTTTTCCCACTATGGGCCAAAGAC10.8130081300813009No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATAAACGCAGAGGACAT10.8130081300813009Clontech Universal Primer Mix Long (95% over 22bp)
CACCACCGGCCGTGCGCGCCGACAGTGGCAGCGCTCCCACGGCGGCCATG10.8130081300813009No Hit
AGATCCATCAATTCATTAGGAGTTACAAAACTGATAATTTAATTATGTTA10.8130081300813009No Hit
GCTCCACAGATTTCAGAGCATTGACCGTAGTATACCCCCGGTCGTGTGGC10.8130081300813009No Hit
GAATCATCATCGAATGGACTTGAATTGAATTATCGAAAGGATTTGAATGG10.8130081300813009No Hit
CTGCTGGCAGAGAGCTTTCTTCTTTTGCTTATTAAACTTTCGCTCTAACC10.8130081300813009No Hit
GAACAGAATCAACATCGAATGGAATCGAATGTAATCATAGAATGGACAAT10.8130081300813009No Hit
AGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTT10.8130081300813009No Hit
GATCAGAATAAGCATAGGAAAAAGAAAATATTTAAAAACATGGTGCATTT10.8130081300813009No Hit
AACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAG10.8130081300813009Clontech Universal Primer Mix Long (96% over 26bp)
CTACTAAAAATACAAAAATTAGCCGGGCATGGTGGTGTGCACTTATAATC10.8130081300813009No Hit
CAATGGGGAAAAGATTCCCTATATAAAAAATGGTGTTGGGAAAACTGGCT10.8130081300813009No Hit
GATAAAGGGGAGTCGTGAGAAATTTTATGGTTTACAATTAAATGGCAGGC10.8130081300813009No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.8130081300813009Clontech Universal Primer Mix Long (96% over 26bp)
TCTCGATGACGCTGAAGGCCGGCGAGGTGCATGCGCTGATCGGGCCCAAC10.8130081300813009No Hit
GCCCACACCCTTGCTGCTGTTTCCTGGGATGACCTGGAATAAGCCACTTA10.8130081300813009No Hit
ATTACAATAGTTATTTCAATAGATATCTTTATATCAACTGATCTTTACTT10.8130081300813009No Hit
GTGCTGAAGACCGACACGCTCACCGTCGACGGCACGCGCGACACCATCAT10.8130081300813009No Hit
TTATACAATTCATGAAAATGATCTTGCCCACAGTCGCCAGCATCAAACCC10.8130081300813009No Hit
CCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCGCCCAGCCGGGTGTT10.8130081300813009No Hit
GGCCAAGGTGGGCGCTCAACTAGTCCAACCTAGGCAAGGGAGGGGAGAAT10.8130081300813009No Hit
TGTATAATCTGCAAATATTCTCTCCCATTCTGCAGGTTGCCTGTTTACTC10.8130081300813009No Hit
CGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCA10.8130081300813009No Hit
CCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACA10.8130081300813009No Hit
ACAAGAATGTTTTCCTCAAAGACCTTGGAGTCATCCCTTTAAAAAGCAGT10.8130081300813009No Hit
GCCCAGGGTCGCCATCTCCAGCTTGTTCTGCGGATCGGCGAACCGCTCCA10.8130081300813009No Hit
TTCCTGGCCTGGCCGAATCCGCCCTGCAGCTGTCTCTTATACACATCTGA10.8130081300813009No Hit
AAACTGAGGCTACCGAAGAAGGGGAAGACTGGGGAATAATTCATATCTCA10.8130081300813009No Hit
GTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCATGCTACCTGACT10.8130081300813009No Hit
AAACAGGGGAAAACCTTCTTGACATTGATCTTTGCAATGACTTTTTGGAT10.8130081300813009No Hit
GAACAGAATCACCATCGAATGGAATAGAATTGAATCAAAGAAAGGACACG10.8130081300813009No Hit
GATCAAGCCACCTGGCCTGACCAAGTCTTTGTACATCTGGTAATCTTGCG10.8130081300813009No Hit
CTACACAATTTCTGGTGTGGTTTTCTATATCTGTAATTTTTCACAATCAA10.8130081300813009No Hit

[FAIL]Adapter Content

Adapter graph