FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74
Sequences flagged as poor quality0
Sequence length146
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCGAGGAAGGTTCGGAGCGATCACGGGCGCTAGCGGCGAATACCTGCT56.756756756756757No Hit
TCATCATCTAATGGAATCATGTGGAATCATCTAAGGGACACAAATAGAAT34.054054054054054No Hit
CCTTCATGATGCGGCACCACAAGAGGCGCGCCGCGCGCATCTTGGCGACT22.7027027027027026No Hit
GTCCTATATGGTAGAAAACCTATTATCAAGGCATGGGGGCAGTTAAAAAG22.7027027027027026No Hit
GAATGCTTCTGTGTAGTTTTAATGTGAAGGTATTTCCTATTCTGAAATGG22.7027027027027026No Hit
CAACAAATACATCCAATAGCGCAAAATCACTAGAGATGACTGCTCTCTGT22.7027027027027026No Hit
GGAGGGGATTCTCCTTCCTGACCTCCTGGGCAGACACCTTCTTATCCAGC22.7027027027027026No Hit
GCATTTAGCCAAGGATCGGGTTCCCCTGCCAAGCACGGGCCCGGATCACT22.7027027027027026No Hit
GAAGATTCTTGGCTGTTTATATTTAAGAGAGAGGTGCTGAGAAGCAAATG22.7027027027027026No Hit
GAGTAATATCACTTCTCACTTACACCACTTTCAGGCACATCCAAAGAGTT22.7027027027027026No Hit
CCACCAGGGAGTGGGGCAGCGTCGACATCATGTGCGCCAATGCCGGCATC22.7027027027027026No Hit
CTGTCATCCCAGCACTTTGGGAGGCTGAGGCAGGCGGATCACCAGAGGTC11.3513513513513513No Hit
GCAATGTATAATGTATAATGTCCAGTTGCCATCAAAGATCACCGATACAC11.3513513513513513No Hit
CTCACACCCATCAGAGTACTCAATTTGTCAGGGGGCTACCCAAATCCATG11.3513513513513513No Hit
CATCTATTTTCCTTTTCTAATGCTCCATTCTACATTACAGAGTGTGATGT11.3513513513513513No Hit
GGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAA11.3513513513513513No Hit
CTCCTCAGGAGACATGAGAAAGAGAGGGCTGGCAGATTCACTCGTTTCTG11.3513513513513513No Hit
CACCATCTCTCGCTGGAGGCCGTCGCCAGCGAGGCCGAAGCCGCGGAGCT11.3513513513513513No Hit
CGTTTCTTTTCATAGAGCAGTTTGGAAACACTCTTTTTGCAGAATCTGCA11.3513513513513513No Hit
GCATGTCTCTCACTTTAAATCAGAAGCTAGAAATGGCTAAGCTTAGTGAG11.3513513513513513No Hit
GGCTTGGGTTATTTCAAAAAGGATAGAGAGAAAATGTTACCCTAACATCT11.3513513513513513No Hit
GTTCTGCTGAATTTTGCTCCAATCGTGTAGTGGTAGGCCTGTTTCTACTT11.3513513513513513No Hit
CAGTACAGATTTATCTGTCATTTGACATTTATTTTATTTCAGGTTATAAT11.3513513513513513No Hit
CCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGG11.3513513513513513No Hit
CACTGGACCCTCCCCCTAAGGCCCTTAGAAAATGGTTGGGAAAATGGATC11.3513513513513513No Hit
CTCAAAATATTCAAGTTGTAATTCCAAGAAACCATTCATCCTTTATGCTA11.3513513513513513No Hit
GCCAGAGCTCGCGTAGTTGAATTTCAGGTATTTGGCAAATATTTGTTTTT11.3513513513513513No Hit
CCATCTGGGAGACTCCCTCGGGCTTCCCTTAATTCCTATGGCTGTGACTG11.3513513513513513No Hit
GCTTGGGAGTCCTCAGCAGGGGGATCATTCACAGTGAGGACAGACACAGG11.3513513513513513No Hit
ATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTAT11.3513513513513513No Hit
GCTACCCAACAAAACGAAGGATTGTTGGGCTCAGGACAATTAAGAAAAAG11.3513513513513513No Hit
ATTCTATTCCATTTGATGATGATTGCATTCGAGTCCATTCGAAGATTCCA11.3513513513513513No Hit
TAACAGAGTTGAACCTTTGTTTTGATACGGCATTTTGGAAACACTCTTTT11.3513513513513513No Hit
TTCTTGAATGGACTGGAATCAAACGGAATGGAATGCAATGCAATCAAATG11.3513513513513513No Hit
TGTCTGGGTCGCCTAGGAGGTCTGGTGAGAATAGTGTTAATGTCATTAAG11.3513513513513513No Hit
CTAATGGGAAGAACAAAAGGTAAGTCTAATCACAGATGTCTTGGTTTTCA11.3513513513513513No Hit
CAGTTTAAAAGCAAACAGATGTATTATGATATAAAAGAAAAATTTTACCA11.3513513513513513No Hit
CTAGAGGATGTCTACTCCCTAGGCTTCTTTGGCAGGGGCTGAGTGGAACT11.3513513513513513No Hit
CTATTATTCCATTAGATTCCATTCGATGATGATTCCATTCGATTCCATTT11.3513513513513513No Hit
CTTCTGGGTGCTGTGGAGTCCCTTGGCCAAACTTGAGTGCACTGGATTCG11.3513513513513513No Hit
GATAACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGAT11.3513513513513513No Hit
GACCATGACGCTTGCCAGAGGAGCTCTCCAGTGTGCTGTGGCAGGCTGGT11.3513513513513513No Hit
CCATTCGATTCCATTCGATGATAATTCCATTCGATTCTATGCGATGATTC11.3513513513513513No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA11.3513513513513513No Hit
CTCTTTTTCTATTGATTGGAATAGTTTCAGAAGGAATGGTACCAGTTCCT11.3513513513513513No Hit
ATTCATAATACTACGCAACATTTTTCTCTGGATTTCATAACACATTTAGA11.3513513513513513No Hit
GTTCGACTCAGCTCGCACTTTTTGTCTTGCAAGGCCTTCCCTGAACACTT11.3513513513513513No Hit
GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT11.3513513513513513No Hit
GGCCTGCTGTTCCCTTTGCTCTTGATTAGGAGAGATGGAAGGAGATGAGC11.3513513513513513No Hit
TGTTTTTGCTCTCCCTCTGTCTCTTTACTCTGGTTCTGACTTCCTTGGGA11.3513513513513513No Hit
TGCGCGAGTCGGGGGCTCGCACGAAAGCCGCCGTGGCGCAAGGAAGGTGA11.3513513513513513No Hit
CTCTCCTGGAAACCACTGACCCTTTTACTATCGCCTTTTTTCGTGATATT11.3513513513513513No Hit
GTTTCGAACTGGTTGGTTTGGTAGGAAAATTTCCTTTTTAAATTTATTTG11.3513513513513513No Hit
ATATTTTATCCGTTCTGAAAGGTTACTTAAAAGATGCCATCGTTGAAATG11.3513513513513513No Hit
GTTCTACAGCAGGACTACTTCTTCCCACAAAGTTTTGCCTTTGAATAAAG11.3513513513513513No Hit
GTTTGGTTTGGACAGATGTCAGGTTACCGACGCAAGCCCACCTGTAAGAA11.3513513513513513No Hit
CAAATGATAAGAATGCAAAACAGCCTTGAAAATGTTAGTAGTCTGGACAG11.3513513513513513No Hit
TGATGGAACATAATGCTAGTTTGACAATTAGATTTTTCTAACCAATGACT11.3513513513513513No Hit
CCATTCCATTGTATTCGGGTTAATTCCATTCCATTCCATTCCATTCCATT11.3513513513513513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)