FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTATACACATATATTATTATCATTAGAGTCAATTTCTTCTTCCTATTTG33.614457831325301No Hit
GCTCAGACCCGTTCGGCGAGCAGCGCCACCCGGGACGAGCCGGCGCGCGT33.614457831325301No Hit
GCGCTAATCTCTGGAGGAAGGGACTACGCTCCGCACTTCTCGCTGGTCTT33.614457831325301No Hit
CTGCAATCCGGCGCATCCAGAGCGGGAAATCAAATATGGTCGTTTGTTCG22.4096385542168677No Hit
CCCGCACCCTTCCACCCAGACGCTACACGGTGGCGCACCGGTGATTGCAG22.4096385542168677No Hit
GTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAG22.4096385542168677No Hit
GACTCGGATGTAATCATTATCGAATGGAATCGAATGGAATCATCGAATGG22.4096385542168677No Hit
GAACAACCCGAATGGAATGGAATGTAATGGAATGTAATTGAGTTGAATAG22.4096385542168677No Hit
GTGTTAAAAACTTCGCTCTGGGCAATTTTGGCCCACTCACTTCTGGTGAT22.4096385542168677No Hit
TGCACAGCCAGAATGCGCTGTATCTCTGCGCATACTCAACAAGATCCATA22.4096385542168677No Hit
GTGCTCGATCTCGACTACCTGGAAGACTCCGGCTGCGACACCGACATGAA22.4096385542168677No Hit
TCTTTGTCTTTTTTTGATCTTGTTGGTTTAAAATCTGTTTTGTCAGAAAC22.4096385542168677No Hit
CCTGCAGCTGTGTTCATTTCCCATGGAGCTGGCAGCCTGGTCTACCCCAA22.4096385542168677No Hit
TGACAAAGCAGTTTCTGAGAATGATTCTGTGTAGTTTTTACACGAAGATA22.4096385542168677No Hit
GTAGGAGGTAATTGAATCATTGGGGCAGGTCTTTCCAGTGCTCGTCTACT22.4096385542168677No Hit
ATAGGAGGTGGAGTGCTGCTAGGGCTGCAATAATGAAGGGCAAGATGAAG22.4096385542168677No Hit
CAGCAGGTCTCCGGCGAAGAGCGCCGACTCCTCGCCGCCCTCGCCGGACT22.4096385542168677No Hit
GTCTCAAAAGAAGAAAAAAAGAAAAAAATGACTAGGGCTATGGACAAAGA22.4096385542168677No Hit
GTATAAGCTAGGAAACAAACTGAGTTAAAGTATTTGCAAGTTATTATAAT11.2048192771084338No Hit
CACTATGTTGCCCAGGCTGGTCTTGAACTCCTGAACTTGAGCAAGCCTCC11.2048192771084338No Hit
GCAATGTATAATGTATAATGTCCAGTTGCCATCAAAGATCACCGATACAC11.2048192771084338No Hit
GGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGTGAA11.2048192771084338No Hit
CTCCTCAGGAGACATGAGAAAGAGAGGGCTGGCAGATTCACTCGTTTCTG11.2048192771084338No Hit
GTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGAGTCAAATTAAGCCG11.2048192771084338No Hit
CACCATCTCTCGCTGGAGGCCGTCGCCAGCGAGGCCGAAGCCGCGGAGCT11.2048192771084338No Hit
AGGAAGAATCAATATCATGAAAATGGCCATACTACCCAAAGTAATTCATA11.2048192771084338No Hit
ATAGAATACAACACCAACGTCGCAAAAAACCAGCAAAAATTCTTAACATT11.2048192771084338No Hit
ATTCCATTCCATTCCATTCCTGATCATTCCATTGCAATCCCTGACTATAA11.2048192771084338No Hit
GGTACAGGAGGCGTCTGGATTCACCTGGCTGTAGAGAATAGCTGAGTTCT11.2048192771084338No Hit
CTTGAAGACTCGCTCTCCAAAGTCACTTAAAAGAAATAAAGAAAAAACAA11.2048192771084338No Hit
ATTCCATTCCATTCCATTCCACTCGGGTTGATTCCATTCCATTCCATTCC11.2048192771084338No Hit
CCTCAAGTGATCTGCCCACCTCGGCCTCCCAAAGTGCTGGGGTTACAGAC11.2048192771084338No Hit
CGGCGGGTGGCGCGTTTGAAGTGAAGCTCGCCAGTTCCGGCAAGACCGTT11.2048192771084338No Hit
GAAGAAGAGCAACTGAAGCAGGCGTGAGGAGGAAACTTGGCTTAAGATTG11.2048192771084338No Hit
CCATCGTACAGATTGCCGATGGAGGCCGGCACGAAATGGCAACGGCGGGC11.2048192771084338No Hit
ATGTACAAGCAGTCGCGCAACCGGCTGCACGCGCCCAGCCCGATCATCAA11.2048192771084338No Hit
GTTAAGACTTTTTACCAAGGTGCTGGTGGATGCAATGCGTCTGCGAATGC11.2048192771084338No Hit
GGGTAGACCGACATCACGTCATACAGCGGGGTCAAATGAAAACGGCCGCG11.2048192771084338No Hit
ATTCTGGAGGATTTTTGGCCACTTTTCTCTTTCTTCAGACCCCACAGGTT11.2048192771084338No Hit
GCTTAAGACGCAGCGTCAGGACACCTCGCTGCTGGGGCGCTGGGCATCGC11.2048192771084338No Hit
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCGTTTGGGTT11.2048192771084338No Hit
CTGTTATAGAGATAATGCCATTTTCTCAATATATTCTGAAGTCTTAAGTA11.2048192771084338No Hit
GGAGGGGATTCTCCTTCCTGACCTCCTGGGCAGACACCTTCTTATCCAGC11.2048192771084338No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA11.2048192771084338No Hit
ATTGTCAGCAGGCGAGCTCTTGGTAAGGTCTTCATATGTGGCCGAAGAGT11.2048192771084338No Hit
CCATTCGATTCCATTCGATGATAATTCCATTCGATTCTATGCGATGATTC11.2048192771084338No Hit
CTCTTTGACGTAGCGCTGCCACTCCACCTGGTAGAGGAAATCTTCCGTAA11.2048192771084338No Hit
TGGCCAAGGTGAGTAGGAAGGCTCGTACGGCCTGTGGCAAGCCTGCTCCG11.2048192771084338No Hit
CCTCATGCTACTCTTCTAAGTCTTCATATTTTCTCTTAAAATCTTAAGCT11.2048192771084338No Hit
CTTGTATTGGGTGCACATGTATTTAGGATAGTTAGCTCTTCTTGTTGCAC11.2048192771084338No Hit
GTGGTGGGCGGCGGCGGGAAGGACAACATCAAGGGCGGCCTGGAGGAAAC11.2048192771084338No Hit
AGACAGCAGCATTCTCAGAAACTTCTTTGTGATGTTTGCATCCAGCTCTC11.2048192771084338No Hit
GACAGGTATTACCAATGAGATTTTCTGTTGTTAGGCCACCTGTGTCCTGG11.2048192771084338No Hit
CCGCTGTACCTATGAATATGACTTTATTTGGATATGGGATCCTTGCTGAT11.2048192771084338No Hit
TTCCAGATGCTTGGAAGTTATAAAAAGTTTTAAACTTAGGTAATAAAAAT11.2048192771084338No Hit
GTGCTGGGATGACAGGCGTGAGCCACCGCCCCCGGCCTATTTATCTATTT11.2048192771084338No Hit
GTGCTAGATGTTTCTAAATTGCACTCAGAAATTCCTAAAAGTATAGCAGC11.2048192771084338No Hit
GCTCCTGAGGCTTCTGCATTCTTCAGGTAGTTCTCGAGTCTTGGCTTTCA11.2048192771084338No Hit
CCACCGTGTCTGGCCTCACTATGTCGCCCAGGTTAGAGTTTAGTGGCATG11.2048192771084338No Hit
CGCCCATCTCGCGCAGGGCGCTGCGCCGGCCAACCCCGGGCAATGACGCC11.2048192771084338No Hit
CTCCGGAGGGATCACCAAGCTGATCTTTTGCTGGGACTTCACTGTCACTC11.2048192771084338No Hit
GGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAA11.2048192771084338No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)