FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003674158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29
Sequences flagged as poor quality0
Sequence length146
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCTGCCGGTTCGGGTGGACGTGCGCGCGATCACCGACACTGGCGTCTG517.24137931034483No Hit
CATTTACCTTACGTTTCTTAACAAATGAAAGTGCTTCGCTGGGCGGAGCG310.344827586206897No Hit
CATCGCGGCTTGCGCACCTTTGCCCAGGACCGCTCGCGGGGCCGTAGGGA310.344827586206897No Hit
GCACGTAGCCCAGAGCGATCTTGTTAGCCTTCGGATCAGAGTTGTTGACC26.896551724137931No Hit
GGCTAGATTCACTCCTTTCACTCCGTGATCGCTTACTTGACTTTACTTTC26.896551724137931No Hit
GCCTATCCTTCCGGTGCTTTCGCAGGAGTTTGGCTTAACCCCCGCGAACA13.4482758620689653No Hit
GCATATACCAAATAACCGCCTTCCGTGTTTGTGAGTTTGTTCCAATAACG13.4482758620689653No Hit
AGCCGCAGCAGCTTTTCGAGGTCGACCAGCAGCCGGTTGTGCTGCTCGGC13.4482758620689653No Hit
CGCCCACGGCAGGCGCGGAGGGATCGATCGCTCCCGCGCCGGCATTGAAG13.4482758620689653No Hit
CGCCATGCCCGTGGGGCAGCCCGTGCCGTTCTCGACCTGGTTCCACAGGT13.4482758620689653No Hit
GCCTGGGTGGGCGCGCTGGTGGCCGACCTGGTCATCAACAAGGCGTTGGG13.4482758620689653No Hit
GGTTTGCGCCGTCCGAGACCAATGAAATCTACAACAAGAAGTTTGAGCGG13.4482758620689653No Hit
GCCATGGCCGCCGCATGGGCCGCACGCTCCGGCACGAACCCCGAGCAGAA13.4482758620689653No Hit
CCGACCTGGTCGCCTACCGCCGCTCGCTGGTCGGCCCCAAGGACAACCGT13.4482758620689653No Hit
ATCGTAGGGTTGATCATCTCCGCCGCGATCTTCGTCCTCCTCATCGGCAC13.4482758620689653No Hit
CATCAGACCCTCGAATATCTCCCATCCGATATCGCGATTTTCCGTATCGA13.4482758620689653No Hit
GGTTAAGCTCCGAAAAAAGAATTTTGATTCATGCAGGAGGTCAGAGCAGG13.4482758620689653No Hit
GTTCGCGCATGTGGTTCGCACCACCGCCCGAAGCCGCCAGGTAGGTCATC13.4482758620689653No Hit
GTGCCCATGGTAGCCACGAGATGGCCTCAGCGGGATCTGTCTCTTATACA13.4482758620689653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)