FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138
Sequences flagged as poor quality0
Sequence length146
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGACGCAGCGTCCCCACTTGGTTGAAGTTGACATCTGACGACGTGAAG42.898550724637681No Hit
TCCAGATGGAATGCTCTCTGCAGGCCAAGCCCGCAGTGCCTACGTCTAAG42.898550724637681No Hit
GAGTGCAATGGCATGATCTCAGCTCACTGCAATCTCTGCCTCCTGGGTTC32.1739130434782608No Hit
ATCTGGAAGTTGTGGACTTTTCTAGTGAGAGCCTCAAGACTGGGGATGCT32.1739130434782608No Hit
CTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTCTTC32.1739130434782608No Hit
CAGTAAGAGCGAGGCATTCCACTGGGTAGCAGAATTCCTCAAGAGAGCGG32.1739130434782608No Hit
GCCTTCCTGGGCATGGCCGTGAGCACCCTGTGTGGCGAGGTGCCGCTCTA32.1739130434782608No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG32.1739130434782608Clontech Universal Primer Mix Long (96% over 26bp)
CTCTACTACATCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGGAAA32.1739130434782608No Hit
CGCTTGGTCTTATAATATCGAGCCAAACGGTGAATCCGGCTCTCTATTAG21.4492753623188406No Hit
TTTCATCCGTTACCAGATGAAACCCACGAGATTTGGCGCTAAGCGTGAGC21.4492753623188406No Hit
ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAA21.4492753623188406No Hit
TCCTAGGAGAGCCCCCGGGACAGGACGCGGGGGCGGTAGAAAGAGCACAG21.4492753623188406No Hit
GTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCA21.4492753623188406No Hit
CCTCTTTGCTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGT21.4492753623188406No Hit
GAGAACCCGAGAAACCGAAAATTGTTTTTTTATGGAAGGTTTAAACAAAG21.4492753623188406No Hit
TGCCTGGATTGGCAGGGCGACGCGAGCTTTGCGCTGTGCCGCGATCCGGC21.4492753623188406No Hit
GCGCGTACTCGGCAAGGCATCGAGGTGAGGCGCCCGACTGGTCTCCTCTT21.4492753623188406No Hit
CCTGTTGAGTGTCTAACAAGAGGAGTTTGTCATGCGGAAAGCGCTTCTCC21.4492753623188406No Hit
CTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGC21.4492753623188406Clontech Universal Primer Mix Long (96% over 25bp)
ATCCTGAGAGATTCACATGGTGTTGCACAAGTACGTTTTGTGACAGGCAA21.4492753623188406No Hit
ATTTAAACCCAAGGCGATAACAACGCTATTTCCCATCTAAACTCATTTAA21.4492753623188406No Hit
GCTCATCTCCAGAACCATCTCCGTGTGTTTCTGGCTCATGTGGAGACCCA21.4492753623188406No Hit
CAGCAGAGTCGACCAGAGGCATCGCGCCAGCCAGCTCCGAAAGCAGTAGA21.4492753623188406No Hit
CACCTGCCCTTTTTCGTTAACTGCCGGTACGTAAGCCGTTAAATACCCGA21.4492753623188406No Hit
CTCTGTAATGTCTGCAAGTGGATATTTGGACCTCTTTGAGGCCTTCGTTC21.4492753623188406No Hit
GTACTTGGGGCTGACTCCGTACACGCGCGCTGCGGCATGGCGGCCCACCG21.4492753623188406No Hit
CAGGTGCACTGGGCAGCAGGGAATGCCAAATCGGCCCCGGGGAGCTGCGG21.4492753623188406No Hit
GTGCCCACCAAGTTATTCTCTTCACTAGGAACAAAATCAACAGCATGGGC21.4492753623188406No Hit
GCAAGAAGGTGAGAAAAGAACTCAGCAGAGTCGACCAGAGGCATCGCGCC21.4492753623188406No Hit
CAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTT21.4492753623188406No Hit
AGTGTATCAAGGTGCTCCAAAACGTGACTACGTTCCTATGGAAAACAGAT21.4492753623188406No Hit
CACCGAAGCTCATGCAACCCAGCGTGAGTCGACTGACCTTGAGCCCGGTG10.7246376811594203No Hit
ACAAGGCCCCGGCCGAGAAGAAGTAATCAGGAGCGCGCCCGCAAATGGCC10.7246376811594203No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGTCTCTTAT10.7246376811594203Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTATTAGAATCAGACGGAATTTAGCATCCTTATCCTTTCTGTTCCTCTCA10.7246376811594203No Hit
ATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCACCACCTCTGCCCAC10.7246376811594203No Hit
GAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG10.7246376811594203No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTAT10.7246376811594203Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAACAGGGTC10.7246376811594203No Hit
CACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAGCTGGGTTT10.7246376811594203No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.7246376811594203Clontech SMART CDS Primer II A (96% over 26bp)
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT10.7246376811594203Clontech Universal Primer Mix Long (100% over 23bp)
GTTCTGGCAGAGAAGAGACAGCTGGGTGGCAAGGATGGCCCTCCTCATCA10.7246376811594203No Hit
GTCGTCGAGAGCTTCGTCCAGCATGCGCTGACCAGCGACCTCATGGTGCT10.7246376811594203No Hit
CCACCACGATAAGAAGGCGTTTCAGGTGCACTGGGCAGCAGGGAATGCCA10.7246376811594203No Hit
CTCCTCAGTGGGCCAGGTTTGCTCTCCCTCCATTGGATCTGGGATAACCT10.7246376811594203No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.7246376811594203Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA10.7246376811594203No Hit
CTCCTGATCTTCCTGAAGATCTCTACCATTTAATTAAGAAAGCAGTTGCT10.7246376811594203No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAAATTACGCGGTCTATTA10.7246376811594203No Hit
CTCCCGGGAAGGGCCTGTCCCAGTCGGCTTTACCCTATCGACGCAGCGTC10.7246376811594203No Hit
ACGCCTGGCCCTGAGTGAGCACCTGGTTACCACTGCCACCTTCTCCATCG10.7246376811594203No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.7246376811594203Clontech Universal Primer Mix Long (96% over 26bp)
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG10.7246376811594203Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GAACGCCAGCAGAAGCTGATCGAGGAAACCGGCAAGCTGGCGAACGCCGC10.7246376811594203No Hit
GTGTTGCACAAGTACGTTTTGTGACAGGCAATAAAATTTTAAGAATTCTT10.7246376811594203No Hit
GTAATCACCGGTGCTGTCCAGGGGATTTCTGGCCTCCCACTGAAGAAACA10.7246376811594203No Hit
TGGCCTCGCTCCAGGCTCTGTGCGAAAGCTGGCGCGTGCCGGTGGAGATC10.7246376811594203No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA10.7246376811594203No Hit
GGCGTTGCTGGGCTTCCGGCGCCCCAATGCTCATCTCCAGAACCATCTCC10.7246376811594203No Hit
GCATAGCTCGGCGGCTCGTCGCCCAGCTGGTAGCACATTGTGGTCAGCAG10.7246376811594203No Hit
GTTCCAGTGTCCCTATCTTGAAGCAGCTGCATGGCCTCTGGCAGGGAAAT10.7246376811594203No Hit
GATTGTGGGAGCCCTGCTCATGGGTCTCCACATGAGCCAGAAACACACGG10.7246376811594203No Hit
GCGACGACTTCCATGGAGACGACCATGCCGAGAACGAACCTGCGCAGGAA10.7246376811594203No Hit
TCTTCGCCCTTGGCACCGAAATCACTGTTGCCGAACTGCAGGCCGAACGC10.7246376811594203No Hit
CTCCCGGCGCGATCGCTTCGCCGATCCGCATCCACTCTTTGGTGGACAGC10.7246376811594203No Hit
GTACATGGGCCTTTCGTTGCCTGATCGCCGCCATCATGGGTCGCATGCAT10.7246376811594203No Hit
GCCCCGGCCCGCTCAAGCAGCAGAATAAAGCTCATAAAGGCGGACGGCAT10.7246376811594203No Hit
GTTCTCGGGCCGCTGTCTGCGGCCTGCAGCAGTGTTTTTACACCACGGCG10.7246376811594203No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT10.7246376811594203No Hit
AAATTATCAACTAGAATAGCTTCATCCATATGAAATATAAAATGAAGAGA10.7246376811594203No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.7246376811594203Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACATGGGAAGCCGTGCTATCAAAGCAGAGTACGTG10.7246376811594203No Hit
TCTTCAGTCTCCCCCGAACGATGAGACACCATGACGCCCCAACCATTGGC10.7246376811594203No Hit
CTCTGGAGCTATCTTCATGATGTAGCAGCAGGTGCCAGGGGCTGGCTTGT10.7246376811594203No Hit
ATCGTGCACCGCGGCCATGGCCGCGCCGACTTCTTTGGCGGTGGCGGTGC10.7246376811594203No Hit
CTCTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGT10.7246376811594203No Hit
GTCCAGGAACGCTGGGTCGTAGTCCTTTTGCTGCTTCCCGTCCTCGTGTC10.7246376811594203No Hit
CCCAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.7246376811594203Clontech Universal Primer Mix Long (96% over 26bp)
TCCCAGATGTGTTCGATCTTTCCGAAGGAGGCCTGCAATGGGCGTGAGAT10.7246376811594203No Hit
AGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGC10.7246376811594203No Hit
GCCGAGCAGGATCCTTCACGAGATCGACCCCGATCAGCAGCCCGCCACCG10.7246376811594203No Hit
ACACCGCGCTGAAGGAGCTCTACGGCGTGAGCTTCTTCGCCCGCATCGAA10.7246376811594203No Hit
CCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAACCAGGTGC10.7246376811594203No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.7246376811594203Clontech Universal Primer Mix Long (96% over 26bp)
TAAATAAATATAGCTAAACGTGGAGTTACCCAGCAATACTTGTAGGTATC10.7246376811594203No Hit
GGAGTAAGGCCCTTCTTGGCCAGTTTGTAAATCTGCTCCTTCACGTCGTC10.7246376811594203No Hit
CCCGCAGGGCGTGAAGTGGGCCATTCCGTACGACAGCTCGCGCTTCGTGC10.7246376811594203No Hit
CTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGC10.7246376811594203No Hit
AGGTAGTGGGGGATGATCTCACAGTGACCAACCCAAAGAGGATCGCCAAG10.7246376811594203No Hit
CTGCTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGG10.7246376811594203No Hit
GCGTGAGCATCCTCAGCCTCGCGGCATCCGCCGTCGTCCTGGGCGCCGCG10.7246376811594203No Hit
TATCAACGCAGAGTACATGGGGAAGGAGAGGAGAGCATAGCACCTGCAGC10.7246376811594203No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCTGTCTCTTATA10.7246376811594203No Hit

[WARN]Adapter Content

Adapter graph