FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138
Sequences flagged as poor quality0
Sequence length146
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTAGCATCCTTATCCTTTCTGTTCCTCTCAAGATGCTTTCGAACAGCAA42.898550724637681No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA42.898550724637681Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCT42.898550724637681No Hit
CCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGACCACGGTCAGG32.1739130434782608No Hit
GGGGAATCCGACTGTTTAATTAAAACAAAGCATCGCGAAGGCCCGCGGCG32.1739130434782608No Hit
GAAAACGGGTTAAGTACCTCACAGCAGGTGCCTGCACAGCGGAAGAAGCT32.1739130434782608No Hit
CCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTG32.1739130434782608No Hit
CCCTTGCCACAAGCGGGTGCGTTTGGTGAAGAGGTGATCGTCAATTCAGA21.4492753623188406No Hit
GTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCT21.4492753623188406No Hit
GGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAG21.4492753623188406No Hit
GGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCT21.4492753623188406No Hit
CACCAGTACCTGATGAGGAGGGCCATCCTTGCCACCCAGCTGTCTCTTCT21.4492753623188406No Hit
GCATCGCGCCAGCCAGCTCCGAAAGCAGAAGAAGGAGGCGGTTCTGGCAG21.4492753623188406No Hit
GTCGAATCGAACGACGCCGCCCGAGAGATCCTGCACACGCGGACGCGGTC21.4492753623188406No Hit
TTCGCATGCTTAATGAATCGGAGATTCGGACTTCTAAAGCAACGATTGGT21.4492753623188406No Hit
TCCTGGACCGCAAGGCCATCTACGCCACGGCGCGCATGCATGCGCTGCTG21.4492753623188406No Hit
CCTTCGGCAAGCCCCAAACCGTTGTGGCGAAATCCGCTCCGCTATTTTTT21.4492753623188406No Hit
GGTTACCACTGCCACCTTCTCCATCGGCTCCACTGGCCTCGTGGTGTATG21.4492753623188406No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT21.4492753623188406No Hit
AGACTGGGGATGCTCTCTGGAGCTATCTTCATGATGTAGCAGCAGGTGCC21.4492753623188406No Hit
CATCACAAAGTAGTTTCTGAGAATGATTCTGTCTAGTTTTTATACGAAGA21.4492753623188406No Hit
AATAGATACCAGGAAGAAGCTAAGTAAAGCAGTGGAGAAGCGCTTTCCGC21.4492753623188406No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG21.4492753623188406Clontech Universal Primer Mix Long (96% over 26bp)
GTGTTGCACAAGTACGTTTTGTGACAGGCAATAAAATTTTAAGAATTCTT21.4492753623188406No Hit
GGTATGAGAATTAATAGCGTGTGAACAAAGTAAAGAACAGGATTCCAGAA21.4492753623188406No Hit
GTGCAGATCCCCTGGCCTTGCTGAGGTGAAAAACCACCGATGTTTCAAGC21.4492753623188406No Hit
AGGTTTAATAGATCCTGGCCTCAGGGTCTCCTTTCTTTCTCACTTCTGTC21.4492753623188406No Hit
GTTCCAGTGTCCCTATCTTGAAGCAGCTGTATGGCCTCTGGCAGGGAAAT21.4492753623188406No Hit
GTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCACCT10.7246376811594203No Hit
CCCCAGCAGGTACATCTCGCCTGACCAGCTGGCTGACCTGTACAAGTCCT10.7246376811594203No Hit
CGTAGGCCTCGTAGGCGGCGCGGCGGATGCGTTCTTCGCGCGAGGCGGCG10.7246376811594203No Hit
GAATTTAGCATCCTTATCCTTTCTGTTCCTCTCAAGATGCTTTCGAACAG10.7246376811594203No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGGTTA10.7246376811594203No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAA10.7246376811594203No Hit
ACTCAGGGCCAGGCGTTGCTGGGCTTCCGGCGCCCCAATGCTCATCTCCA10.7246376811594203No Hit
GAGTACATGCGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.7246376811594203Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAG10.7246376811594203No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGTAGAAGGG10.7246376811594203No Hit
GTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCCCCGGTGTCCCCGCGAGG10.7246376811594203No Hit
CGCCGATGGTGATGATCATGGCCATGACCACGGTCACGACCATGGCGATG10.7246376811594203No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT10.7246376811594203Clontech Universal Primer Mix Long (96% over 26bp)
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTAAA10.7246376811594203No Hit
ATTTTATTGCCTGTCACAAAACGTACTTGTGCAACACCATGTGAATCTCT10.7246376811594203No Hit
GTCATCTTGGGCATGAAGCAGAGCGGTGCATCAGAAAAACATGACGATTC10.7246376811594203No Hit
GCTGTTTCATGCTCATCAACACCGGCTCCGAGCCGGTGGTCAGTGACCAC10.7246376811594203No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACCTGTCTCTTATA10.7246376811594203No Hit
GCCCCGAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGC10.7246376811594203No Hit
CCTCCGACACCCACCCAGACTGAGGCGAGTCGATCCCGGGTGAGCCGCCA10.7246376811594203No Hit
GCTGCATATCGTTGGATATGGTGATTTCCAGATGAAACAGATAGATGCCC10.7246376811594203No Hit
GTCGTGCCGTGTTCGGGATCCGAGGCGCTCACCGGGGCCACCAGGTGGAC10.7246376811594203No Hit
CCACTGAGGGCGAAGATGAAGGACGCCTCGTCGAGGTCACCGACGAGGGC10.7246376811594203No Hit
ATTCTGACTTAGAGGCGTTCAGTCATAATCCCACAGATGGTAGCTTCGCC10.7246376811594203No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.7246376811594203Clontech Universal Primer Mix Long (96% over 26bp)
CACACACACACACACACACACACACACACACACACACACACACACACACA10.7246376811594203No Hit
TGGAGCCCCGGTCCTATCTTAGAGCCCCTGAGCTTCAGGGAAGGGGCGGG10.7246376811594203No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA10.7246376811594203No Hit
TGGCCGGGTCGATCCACACGCGCATCGCGTTCTCGGAGCCGAAGAGCTGC10.7246376811594203No Hit
CACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAACCAGGTGCT10.7246376811594203No Hit
CACCACAGTCAACTCACCTGATCAGGCTGATGTGGTGATCGTCAATACCT10.7246376811594203No Hit
GCTCGATGCGCTGGAGACGCCGAAGCGCTACCTGCCCATCGACATCTCTG10.7246376811594203No Hit
CACCAGCACCATGCCGAACATGGTCAGCACGTTGATCGAGAAGCCCAGCG10.7246376811594203No Hit
GGGTAACAACAGGCCCTCCCTCGTTCTCCTGGGCCGCCCTAGCGTGAAGA10.7246376811594203No Hit
GATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCGATTTGGCA10.7246376811594203No Hit
GAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGAT10.7246376811594203No Hit
GGAATCCGACTGTTTAATTAAAACAAAGCATCGCGAAGGCCCGCGGCGGG10.7246376811594203No Hit
GATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCGATTTGGCC10.7246376811594203No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCAGCAGTGGTA10.7246376811594203Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTGCAACACCATGTGAATCTCTCAGGATTACACCGATCTGTGAAGGAGTA10.7246376811594203No Hit
ATCGCGCACTCACCTCCTCGTGGATCGACGGTTGGCAGGGTCGAATAGAC10.7246376811594203No Hit
CCGATTTGGCATTCCCTGCTGCCCAGTGCACCTGAAACGCCTTCTTATCG10.7246376811594203No Hit
CTACTACATCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGGAAAGG10.7246376811594203No Hit
GCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGGTCCTC10.7246376811594203No Hit
GTTAAACAATCATTTTATTGCTTGAGTACACAGACAAATTTATGCGACCA10.7246376811594203No Hit
CTTTCGAACAGCAACTGCTTTCTTAATTAAATGGTAGAGATCTTCAGGAA10.7246376811594203No Hit
GGCTTGTAGGCGATCAGCAGCTGCTGGTAGTCATACACCACGAGGCCAGT10.7246376811594203No Hit
GTGTGGCGCTTGGTGTCGATCAGCACCGAGCTGTGCAGGTACAGCACGTA10.7246376811594203No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG10.7246376811594203Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GTACAACCAGCTCCTCTTCAATTCTGAGGAGCTGGTTGTACTTGGCCAAG10.7246376811594203No Hit
GAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGC10.7246376811594203No Hit
CTCGCATATGGCTGGTCGGGTCACCGGTTTGGACGCTCTGGCCAGCGGTG10.7246376811594203No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTAT10.7246376811594203Clontech Universal Primer Mix Long (96% over 26bp)
CGTCAGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTGTGGCTTA10.7246376811594203No Hit
GTCCTGATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCGATT10.7246376811594203No Hit
GGGAGCCCCGGTCCTATCTTAGAGCCCCTGAGCTTCAGGGAAGGGGCGGG10.7246376811594203No Hit
GTGCAGATCCCCTGGCCTTGCTGAGGTGAAAAACCACCGATGTTTCAAGA10.7246376811594203No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTAACAAGTAATCTGCGC10.7246376811594203Clontech SMART CDS Primer II A (96% over 26bp)
ATTTATGCGACCAGGGCAGAGGCTGTAGATGATTCATATTTACAATTGGG10.7246376811594203No Hit
GTACTCTGCGTTGATACCACTGCTTCCCCATGTACTCTGCGTTGATACCA10.7246376811594203Clontech Universal Primer Mix Long (96% over 27bp)
GTGCAGGCCCAGGTGCTGAACCTGCTGCACGATCTGCAGCAGCAGCTGGG10.7246376811594203No Hit
CAGTTGGTTTGTTTGTACATGGATGGGTGTTTGGGTTGTCCCACCTTTCT10.7246376811594203No Hit
ATTTATTCGACCAGGGCAGAGGCTGTAGATGATTCATATTTCCAATTTGG10.7246376811594203No Hit
GAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGG10.7246376811594203No Hit
GAGGAGGGCCATCCTTGCCACCCAGCTGTCTCTTCTCTGCCAGAACCGCC10.7246376811594203No Hit
TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATG10.7246376811594203Clontech Universal Primer Mix Long (96% over 26bp)
GTGCCCACCAAGTTATTCTCTTCACTAGGAACAAAATCAACAGCATGGGC10.7246376811594203No Hit
GTGTAATCCTGAGAGATTCACATGGTGTTGCACAAGTACGTTTTGTGACA10.7246376811594203No Hit
CGGGCAAGGGCCGTCTGGCACTGAAAACCCTAAGAAAGAAGGTGAGAAAA10.7246376811594203No Hit
ACTTTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.7246376811594203Clontech Universal Primer Mix Long (95% over 23bp)
GCCCAGCGCAGCGCCCAGGCCGAAGTGCACGAACACCGACGCGTCGTAGG10.7246376811594203No Hit
ATATAGGCCCGGCGATGCCGGCTCCGCGGTATCCGTGGATGAAAAAGGGC10.7246376811594203No Hit

[WARN]Adapter Content

Adapter graph