FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674163

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674163
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136
Sequences flagged as poor quality0
Sequence length146
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTAAAGACTATTTTCAGAGCTACATCAGATGTAAAATAAATAAGTGTA42.941176470588235No Hit
AGCTGGGCCTATCTGCCCGATGTCGGCGAAACCTTCGCCCGCCTGCTGAA42.941176470588235No Hit
ACTTGTGACTTCCTTGTTGAAGAGGTGATGGTGTTGACTTTGAGTTGGTG32.2058823529411766No Hit
AATCGGTAGAATGCATCGTAGTCGGGCAGGTTTTTGACAGCCGCAAGCTT32.2058823529411766No Hit
GATCTGGGTTCAAATCCTGTCTCTACTGCTTCAGGCTCTGGAAGCTTGGG32.2058823529411766No Hit
AACTAAAGCAAGGATAAAATTTAGGTTATTAGGAGGAATAAATGAACTGC32.2058823529411766No Hit
CGTAGCGATACACCGGCACTGCTCGCACAAACTCTCCGTGTCACCTCGGT32.2058823529411766No Hit
GGTGAAACCTCATTCCACTAAAAATACAAAAAATTAGCTGGGCGTGGTGG21.4705882352941175No Hit
GATTAAAGAAATTGAAGAGGACACACACAAAAATGGAAACATTCTTTAAC21.4705882352941175No Hit
GAATGGAATGGAATGGAATGGAATGGAATGAACCCGTGTGCAATGGAATG21.4705882352941175No Hit
AAAGTGATGTTTCAATATACGTACACATTGTGGAATGATCACACCAGAGT21.4705882352941175No Hit
AGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAGAAAGCAGG21.4705882352941175No Hit
CATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGG21.4705882352941175No Hit
GACTCAAACTATAAAAATCCTAGGAAAAAGCCTAAGAAATACCCTTCTTG21.4705882352941175No Hit
CTTCTATCTAGTTTTTATTGGAAGATATCTCCTTTTTCACCGTAGACCTG21.4705882352941175No Hit
GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT21.4705882352941175No Hit
GAGCTGGATCTTTTTATCTTAGCTACAAATAAATTTTGATGTTACCGTAT21.4705882352941175No Hit
ATTCAATTCCGTTCAATGATTCCATTTGATTCCATTTGATGTTGATTCCA21.4705882352941175No Hit
GGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTT21.4705882352941175No Hit
GGTATTGGGGGTGGTGGGGTGGTGCGTTCTGGCTTTCTAGTGTAACAAAA21.4705882352941175No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC21.4705882352941175Clontech Universal Primer Mix Long (96% over 26bp)
ATGTTACGTAGCGATATCCTTAGCCGTCTCCAGCCTTGTAAAAGAGGTCA21.4705882352941175No Hit
TGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATG21.4705882352941175Clontech Universal Primer Mix Long (96% over 26bp)
CGTTCATGGTGTCCGAAGCGGTGCGCGGCGAAGGCGCGGTGCTGCTTGAT21.4705882352941175No Hit
CATAATATGTTGAAAATATGTCAAAAATGCATTTGCGGAGGCCGGGCATG21.4705882352941175No Hit
GAGTTGAACGACGAGGCGGCGACGATCACCTCGCGGTTCGCCTTCACTAT10.7352941176470588No Hit
GTCTACGATGGAATGTTAAATATACTCTTAAATTGGAAAGGAAATAAAAA10.7352941176470588No Hit
AACCCGGCGTTCGGTTCATCCCGCAGCGCCAGTTCTGCTTACCAAAAGTG10.7352941176470588No Hit
GCTTATATGTCTTCTTTTGAAAAGTGTCTGTTCGTGTCCTTTGCCCACTT10.7352941176470588No Hit
TCAAGCAGCACTGCGACGCGAAGGAAGCCGTGTCGATCGCGCTGCTGGGC10.7352941176470588No Hit
GCACATGCCGTGCACTGGCTTCTGGTTCTGCGCGCCGTGGAGGGTGTCGG10.7352941176470588No Hit
GTATTTGAATGACCTTAAATTCAATTCTCTGTCTTGAGATTTTCCAGAAT10.7352941176470588No Hit
GGAATCGAGTGGAATCATCGAAAGAAATCGAATGGAATCATTGTCGAATG10.7352941176470588No Hit
CTAATAACCACAACTGGCATTTATTGAGACAACTGGCATTTATTGAAAGT10.7352941176470588No Hit
GCTCTAAGGGGAAAGTGTGCCTAATAGTATGAGTAAAGGCTGTGTAGAGT10.7352941176470588No Hit
GCTTGCTTTTTGACTCTTTCTTGGTGCTTCTGTTATTCATCAGTTGGGTT10.7352941176470588No Hit
AGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGC10.7352941176470588No Hit
ATCCCGCGCTGGGGCGTTTGACGCGCCGCCGGACGCACCATAACGAGGGC10.7352941176470588No Hit
GGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACCGTT10.7352941176470588No Hit
GGAAACGTCTTCCAATAAAAGCCAGACAGAAGCATTCTCAGAAACTTGTT10.7352941176470588No Hit
AACGACAACTTTGTTCAAGTCAGCAGATAAGGTGGCTGCATTCAAAACCA10.7352941176470588No Hit
GCTTGGAGGAGATTGATTACAGTACCGACAACAGCTCAGACCAGGAAGGG10.7352941176470588No Hit
GGTATAATGAGGGATGTTCGACTTCCCTTCCTATCATGGCCTGAACTAGT10.7352941176470588No Hit
AATCAGTAGAAATAAGTACAACTTCCACTTAAGAAAAAAGCTTCAATCAG10.7352941176470588No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.7352941176470588Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAAAAAAATAAATATCCCCATTAAAAAGTGGGCAAAGGACATGAACAGTC10.7352941176470588No Hit
GGAATGTTCTGGAAGTGAATGGACTCCAATGGAATGGATTCCAAAGGAAT10.7352941176470588No Hit
CCCTAGACTAGAGGCAAGCATTTAGATCAGGAGGCAAAGTAATTTCTTGA10.7352941176470588No Hit
CCCAGGCCGATCTCGCCCCGGCCATGCAGCACGCACTCCTCGCGCCGCTG10.7352941176470588No Hit
CGGCAGTACTGATGCGCAGCCCCATGCGGCCGAGGGTCAGTACCAGCAGT10.7352941176470588No Hit
CCATATATTCATCCACATCCAAAAGATTGGGTTGGTATATTCAAGGTTGG10.7352941176470588No Hit
AGAATGATCTGAAAACAAGTGACTCACTTAGAAGAGGGTTCAAAGTCATG10.7352941176470588No Hit
GGTCAGCTGCGGTGTGGGATGCTGGAGTTTGGCTGCAGGCTGACATCATT10.7352941176470588No Hit
GTATATAGGAGATGGCTACGTGATCCATCTGGCTCCTCCAAGTGAGTACC10.7352941176470588No Hit
GGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAG10.7352941176470588No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC10.7352941176470588Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGCCCTGTCAGCTTCTCGCAGTTCAAGTTTCCTCCCCAGTCACCCAGGAA10.7352941176470588No Hit
GTCCCTGAATTTGATTTTCTATGCAAAGGCATTGATTTCCAAAGAAGTGT10.7352941176470588No Hit
GGTAAGACCATCACTCTCGAGGTGGAGCCGAGTGACACCATTGAGAATGT10.7352941176470588No Hit
CTTTCCATTCTCCCAACTTGTTCTCGAAGTTGTGCTGTTTCTTTTTCCAG10.7352941176470588No Hit
AGACGACGTCGCGCGTCGTGCCCGCCACCGCGCTCACGATGGCCAGCTCC10.7352941176470588No Hit
GGTTTCACCACGTTGGCCGGGCTGGTCTCGAACTCCTGACCTCAAATGAT10.7352941176470588No Hit
ACCCTGCGCGTCCCCACCCTCCGCTGCCGGGTGCCTGTCTCTTATACACA10.7352941176470588No Hit
TCAAGCAGCACTGCGACGCGAAGGACGCCGTGTCGATCGCGCTGCTGGGC10.7352941176470588No Hit
GCGTGAGCTGTGTTTGTGGAGATGTGAAGGATCTCTAGGCACTTTTCCAA10.7352941176470588No Hit
GCTGAAACACAGCTTTGCCCCAGGCTTTGGCACTTCCAGCCCCAGGAGAG10.7352941176470588No Hit
GATATTGAGGACGTTCGCGGGCGCGAAGGCTTCCTTTGCGCTCTTCTGGG10.7352941176470588No Hit
CTAAGTCCCTGAATGGACTAAGTATGAAATGAAACCGGTCTCACTGCTAC10.7352941176470588No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGTCTCTTAT10.7352941176470588Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAACTGCGCAACGCCTTCCACATTGATGGCCGACATCACCATGAACGCAA10.7352941176470588No Hit
GTACACAGCAAGCATTCATGATCTGACTGCTTACTTCTCCTGCCTTGCCT10.7352941176470588No Hit
TTCTCATGGTTAAGTTCTCTTTCCATTCTCCCAACTTGTTCTCGAAGTTG10.7352941176470588No Hit
GGTAAAAGAAACTCTAGGTTAAGCAAGTAAGCAGCCTTTTCCTCCCACTG10.7352941176470588No Hit
GCGCGCATCGAAGGCGATGCGGGTGTCGTCGACGGCAAGCTCCAGTGCGC10.7352941176470588No Hit
GGGGGTACCTGTGCAGGTTTGTTACAAAGGTATATTGTGTGATGCTGAGG10.7352941176470588No Hit
CCTCCTAGGTGCCCTGGGAATTGCAAACAGCTTTCTGGATGAATATCTGG10.7352941176470588No Hit
CCCTTCGCCTGCTCGAAGCGCGCAGCAAGGGCGCGCAGCGTCTTGGCGCC10.7352941176470588No Hit
GTGGTAAATTACATTTATTTATTTTTAGGTGTGAAAATCACCTTACGTTT10.7352941176470588No Hit
GTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCA10.7352941176470588No Hit
GGCAGAGCCTCTGAAACGTGGCTGAGGCAGAAGCTGCGGATGATCTAATG10.7352941176470588No Hit
ATTGCATTCCCTTCCATTCGATTCCTTTCCATTCGATTCCATTCCTTTCC10.7352941176470588No Hit
CTTCATATGAACATGGTACACTCCCGTTCATCATATGCTTTCTCCTAGAT10.7352941176470588No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT10.7352941176470588No Hit
CTCTTGATGTTGCCAGACCAACTCTCTATTTGTCATTGACCCCTTTTCTA10.7352941176470588No Hit
CTTTTAGTGGAATCTGCAAGTGGATATTTGGAGCCCTTGAAGGCCTATGT10.7352941176470588No Hit
GGGTAAAACTAACCTGTCTCACGACGGTCTAACCCAGCTCACGTTCCCTA10.7352941176470588No Hit
GTGTTATTAAGGAAGTCCCTGATCCGTCGTCAATCTTACTTGCAAAACAA10.7352941176470588No Hit
CGTGAGCTACTGTGCCTGGCAATTTGCCGAACTTTCTTGTGACAAACTAT10.7352941176470588No Hit
CAGGTTACGCATTGTTTCCTCTGTACATCTTTGCTCTGCTTCCATTGCTA10.7352941176470588No Hit
GCAACAGCCACTTCGTTGAGCACGTCGAGCTCCGCTTCGCTCTCGACGTT10.7352941176470588No Hit
ATAAATCACCATCTTATCATGTTTTCACCATGGAGCAGCTGAGCTCAGCA10.7352941176470588No Hit
TTCACATACTATGTCAATTTTTGTTCTCAACTCCCATAGCATCTTGAAAA10.7352941176470588No Hit
ATATGAGCCTAAAAGCGAGACAGACAAATGGGTAAAGTAGCACAACACCT10.7352941176470588No Hit
GAGAGATCCACTGTTAGTCTGATGGGCTTCCCTTTGTGGGTACCCTGGCT10.7352941176470588No Hit
GTAAGGTCATTTGGTTTGGATCTGTGTCCCCACCAAATCTTATGTCAAAT10.7352941176470588No Hit
CCCAGGGATCGCTCTAGGAAGGGACAGCTAATCTGATAAACACGGGGTTA10.7352941176470588No Hit
GTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTNCA10.7352941176470588No Hit
GGCTAGCTCTTCCTGTATTATATTGAATAGCAGCGCTGAAGGTGAGCATT10.7352941176470588No Hit
GTCACACAGTCCTTCCGCTTGCTGTCGCCTGCCGAACAGAACGCCATCAA10.7352941176470588No Hit
AGCTGAGGGTACTGAGATAAACTGGGGCTACATTGACCCAGACAATGTAA10.7352941176470588No Hit
CCCGGGATGCTGCGCGGTGCCGGCGGAGCAAGGAGACGGAGGTGTTCTAT10.7352941176470588No Hit
ATTCCATTCCATTCGATTCCATTCCATTGCACACGGGTTCATTCCAATCC10.7352941176470588No Hit

[FAIL]Adapter Content

Adapter graph