FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136
Sequences flagged as poor quality0
Sequence length146
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCACCAGATCGCGATTGTCGAGCGCGAGCGGGTGACGCCAGAAGGGGC42.941176470588235No Hit
ACTTTAGATGGTCTGAATAGTATGACACTAAAAATTCAAGAGAAAAGATG42.941176470588235No Hit
GCGTATATGACACGTGACCCAGAGGTCACAAGGTCGTGGCACGCATCCAT32.2058823529411766No Hit
AAATTGAAGTTCACCTGGAAACAGGACTGAACAGCAGAGATTCCACCCTC32.2058823529411766No Hit
GTTCAAAGGGCTGGTCTATCCGCAGATATGGGAAGACCCGGAAGTTGATA32.2058823529411766No Hit
TCCCTAGGCAGCAGCATAAAGGACATTACAGTTTCATGCCAAAGAATTCT32.2058823529411766No Hit
TTACAGTATTCTCTGATGGTAGTTTGTATTTCTGTGGGAAGAGTGGTGAT21.4705882352941175No Hit
CTTTAGATCAGCAAAAGGTTTTGTGAAAGCTCACAGAGTACAAAAGATGA21.4705882352941175No Hit
ACTTAGAACTGGTGCGGACCAGGGGAATCCGACTGTTTAATTAAAACAAA21.4705882352941175No Hit
TGCTTTGCCAAGACAAGGAAGATGCCCTCACCACAGAGTGGAGCCATCTT21.4705882352941175No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACG21.4705882352941175No Hit
TTGCTATACTCTGGTGTGATCATTCCACAATGTGTACGTATATTGAAACA21.4705882352941175No Hit
GGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTT21.4705882352941175No Hit
GGCCGGAGCAGGTATTAGGCAAAAGGAATGCACTGAAACTTTAACTACAT21.4705882352941175No Hit
ATGTTATCTCATTGTAGTTTTAATTTGCATTTCTCTGATGATTAGTGATG21.4705882352941175No Hit
CTCGTGTTTATTCCATTCCTTTCCATTCCATTCGGGTTGAATCCATTCCA21.4705882352941175No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC21.4705882352941175Clontech SMART CDS Primer II A (96% over 26bp)
GCGCACGACTTCGCGGCGGCCTTCTTCAGCGCATCGTGCTGCGAGGCGTC21.4705882352941175No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC21.4705882352941175Clontech Universal Primer Mix Long (96% over 26bp)
CCCGCCCATCCAGTAATGCGCTCCTGGGATCACCGGAACCGACTGCCGGG21.4705882352941175No Hit
GTTCTGAAACACACTTTTTGTAAAATCTGCAAGAGGATATTTGGATAGCT21.4705882352941175No Hit
CTGAAGTGCAGTGGCACAATCTCGCCTCACTGCAACCTCTGCCTCCCGAG21.4705882352941175No Hit
CGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCG21.4705882352941175No Hit
GCAAGAAATAACTAAGATCAGAGCAGAACTGAAGGAAATAGAGACACAAA21.4705882352941175No Hit
TCATCGAATGGAAATGAAAGGAGTCATCATCTAATGGAATTGCATGGAAT21.4705882352941175No Hit
CTATAGCTCTGTAGTATAATTTGAAGTCAGGTAATGGGATTTTTCCAGTT21.4705882352941175No Hit
TCACTGGGCACTATAGTAAACACTTCACATACATTAATTCATTTAGTCCT21.4705882352941175No Hit
GTATAAAAATTTGGGTTGGTAGTTTGCCAACCCCTGGCCTAGAATATAAG10.7352941176470588No Hit
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT10.7352941176470588Clontech Universal Primer Mix Long (96% over 26bp)
CATGTGCGTGTTGTCTAAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCG10.7352941176470588No Hit
GTGCAGGTAAAAATGAGAAAAAGGTAGCACTCACTCAATTCCCTCCAGGA10.7352941176470588No Hit
CGCCGGCCCTGCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTT10.7352941176470588No Hit
CTGGAGTACAGTGGGCGAAAGAGCAAGACCCTGTCTCAAAAAAAAAAAAA10.7352941176470588No Hit
AGATTGCACCATGGCACTCCAGCCTGGGGGACAGAGTGACACTCCGTCTC10.7352941176470588No Hit
CCACGTTTGTTGATATCAGCATTCAGACTCTGGAATCTTGAATGAACCTC10.7352941176470588No Hit
ATAAAAATCAGACCTTACAGAAATGTAAAAGTAAAGAAAATTGCACAGCA10.7352941176470588No Hit
CACTCATTCTGACGGGCGTGAGATGTTATCTCATCGTGGTTTTTCCTTGA10.7352941176470588No Hit
GGGTAGAGAGCGATATCTGAAGGTAAAGAGAAGGAGGGCTGATAATACCC10.7352941176470588No Hit
GCATCACTCATTAAAATGTTTTCCATTAAAACAAGTTGCCTTTCTCAGAG10.7352941176470588No Hit
GGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCCCCCGCG10.7352941176470588No Hit
CCTTCCATTACACTCCCTTCCATTCCAGTGCATTCCATTCCAGTCTCTTC10.7352941176470588No Hit
ATGCCTCCAAGACAGCGTCTCACATCTGAAAATGGCACAAAAATCCCTAG10.7352941176470588No Hit
CCTTTGGAAATATACAGACTGGGGTTTGAATCCCAGTTCCACTCTTACAG10.7352941176470588No Hit
ATTCAATGAATGGAGCTGGGATAACTGGCTAGCCTTATGCTGCAGATTGA10.7352941176470588No Hit
TGCATATACTACAAAAACTTAGTTTCAAAACTGCTCTCTCAAAAGATAGG10.7352941176470588No Hit
GCACCCGGCAGCGGAGGGTGGGGACGCGCAGGGTCTGTCTCTTATACACA10.7352941176470588No Hit
CTCAAATTCAGAAAATTCAGAGAATATCACAAAGAAACTCCTTGAGAAGA10.7352941176470588No Hit
GGCTGAAGCAGGAGAATCGCTTGAACCCAGGAGGCAAGTGCTGTGCAGTC10.7352941176470588No Hit
CACACATGATGACCTACATTCTCATCTGAGAGCTTCTCACACGTGATGAC10.7352941176470588No Hit
GTTTATACTCGTGGTGGTTTCCTTTTGTCTCCTTTATTACATGGGACTCT10.7352941176470588No Hit
GCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGAT10.7352941176470588No Hit
ATAGATAGATGTTAGCCAAATGTCAAGTCAAAGGAAGAGCAATACATCAA10.7352941176470588No Hit
GTGAAGTAACATGACTTTGAACCCTCTTCTAAGTGAGTCACTTGTTTTCA10.7352941176470588No Hit
AAGTACACCTTTCCAGTTTCGAGCTTCTTCTCCAGTTGAAGAGCTGCTTA10.7352941176470588No Hit
AATGTGTCCTGAAATAGAAAAAGAGATTGCAGTGGTTATGTTGAACCACT10.7352941176470588No Hit
GCTCACAATACTGTACTTCATCTTCTGACCAACCATCTCCTTCGCAGAAC10.7352941176470588No Hit
GTCGTCGTCAGTGCATTTCTTCTTTGCCAAAACGCAAAGAAGGCCTGAAC10.7352941176470588No Hit
CTCTGGAGCGACAGCTCATGCTGCCCCGGTTGCCCCCATAGTTGCGGTGA10.7352941176470588No Hit
GTCTCTCTTGGTTATCAGGCTCTCAAAATACTCTCCTGGGATTCTCAACT10.7352941176470588No Hit
ATCACATGGAATGGGAACGAATGGAATGGAATGGAAAGGAATGGAATCGA10.7352941176470588No Hit
ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAA10.7352941176470588No Hit
GTATTGTGGTTTCTAACACAAATGGAAATAATTTAAGGAAGGATTAAGTC10.7352941176470588No Hit
CTATAACGGCGAGAAGCAGGAAGGCTTCGGCCTGATGGAGCAGACCATCT10.7352941176470588No Hit
CAATCAAAACATTTATTCATTTGGTTTGCAGAAGAGCAAAATTGGAATTT10.7352941176470588No Hit
CCATTCCATTCCCCTGCACTCAGATTGATTCCATTCCATCCCATTCCATT10.7352941176470588No Hit
GTACCGGCCTGTATTATTGTAACAATAACTCTAGCAATGTATAGTGTATC10.7352941176470588No Hit
GCTGCGCGAGGGCATCAAGGTCGTGATCGCGGGACAGCCCAATGCGGGCA10.7352941176470588No Hit
GTTGAATGGAAATATCCGAAAGAAATTTCTGGGAATGCTGCTGTCTAGTT10.7352941176470588No Hit
CCTAAACTAGCCTTGTACAAAAAATGTTATAAAACTGTTAAATTGATTTA10.7352941176470588No Hit
GCGCTATCTCGGTGCTGGGCCCGTCGTTGCCGTGGAAGCGCACCCAGGTG10.7352941176470588No Hit
GCAACACAGCTGCTAGTCCAATCCAATGGTTGGAGACACAGAACTTGCTG10.7352941176470588No Hit
AGGTGGTGACGTCGGTCACGTCGAAATGCGTGGTGAGCAGCTCGCGGCCC10.7352941176470588No Hit
TGCAGAAACTGCTCCCTTTGAACTCTCTTGGCTGAACAGCAGATTACTGA10.7352941176470588No Hit
ATGTATGATTTGCAAACTTTCTCTTCCAATCCACGGGCTGTCTCTTCACT10.7352941176470588No Hit
CATATGCAAATCATAAATGTGATTCATCAACAGAATGAAGGACAAAAATC10.7352941176470588No Hit
CATCCCAGGTCCATCTTCTAAACAAGGATTTAAAACAGTTTTTTTTTCTT10.7352941176470588No Hit
CTTATGGGTAACGTAACAGAACTGATAAAATTCTCCATCATCATTTGGAA10.7352941176470588No Hit
CTTCAGCATGCATTTCTAAAACTAGGGCACAACACACTTCCACTGATGAT10.7352941176470588No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT10.7352941176470588No Hit
CAGTCCAGCCCCTCGAAAGTCACGCGGACTTTGCCAGTAACCGGCTGCTT10.7352941176470588No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTAT10.7352941176470588Clontech Universal Primer Mix Long (96% over 26bp)
GCACTTGGCAAGCAGATGAGGCAGGACTGGTTGGCCAGAGGCCAGGGTCG10.7352941176470588No Hit
TCACTGGGCACTACAGTAAACACTTCACATACATTAATTCATTTAGTCCT10.7352941176470588No Hit
GGCTGGTCTTGAACTCCTGAACTCAGGTGATCTGCCTGCCTCAGCCTCTG10.7352941176470588No Hit
CAAGTACACCTTTCCAGTTTCGAGCTTCTTCTCCAGTTGAAGAGCTGCTT10.7352941176470588No Hit
GTTCACTAATGTCCACAGGCAGCCCCAATCCACCTCAGTCAAACGTCACA10.7352941176470588No Hit
CGATGATTCTATTCGAATCCATTTGATGATTTCTTTTGATTATATTTGGT10.7352941176470588No Hit
CATATAGTCGCCAAGGTCGACCTTGATCGGCCCGCTTGGCCAGCTCGCCT10.7352941176470588No Hit
GGTGGAACCATGAACGCTGCCTGTGAGCTGCTGGGCCGCCTGCAGGCTGA10.7352941176470588No Hit
TATTGGGACAGCAAAAGCCAGTAACCATGAGTATGAGGAAATCTCTTTCT10.7352941176470588No Hit
GAGCCAGAGCGCCGCGCCGGCCGAGACGGCCGACAGCGCCCACCACCAGT10.7352941176470588No Hit
ACCTACGGCAGAGAGGACACGTCATTCTGAGCGTAAGGGCCACAGCGAAA10.7352941176470588No Hit
GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACG10.7352941176470588No Hit
GTCAAAGATACTATGTCCTGTTAGCTCCACCTGTGTAAGTCCCATGAACT10.7352941176470588No Hit
GTTTTATCCGGTAAAGCGAATGATTAGAGGTCTTGGGGCCGAAACGATCT10.7352941176470588No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.7352941176470588Clontech Universal Primer Mix Long (96% over 26bp)
TTCGAAGCGTGCATTGCAATTGACGTGGTAGCCGGCATTGACGAGCCAGT10.7352941176470588No Hit
ACTCCTGACCTTGTGATCCACCCGCTTCAGCCTCCCAAAGTGCTGGGATT10.7352941176470588No Hit
TCCCGAGACCGTGGCGGCGCAGTTGTTCCGCCCGTTCTTCACTACCTCCG10.7352941176470588No Hit
ATGGATGCTGGATGCCCTGGCGGCCTACCAGCGCGGCTTCGAGGGCCGCG10.7352941176470588No Hit
GGGACAAGCATCTAAATAGAAAATCCTGGCCCGGAAAATCCTGGTCTTAG10.7352941176470588No Hit

[FAIL]Adapter Content

Adapter graph