FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences157
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA42.547770700636943Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTGTGTGTGTTGTTTAGTAGAGATGGGGTTTCTCCATGTTGGCCAGGCTG31.910828025477707No Hit
CTGAAATCAAAGTATTGGTAGGGCAACTTCTGCTGAAGTTTCTAGGGGAG31.910828025477707No Hit
ACACTGGACAAAGAAATCATAGATGACAAAAACAAATGGAAAAACATTTT31.910828025477707No Hit
CTTCCCATTCCCAGCAGAAGTTCTCCATGAACTGCGACGGCAGCTCCACC31.910828025477707No Hit
GCCGGCGCGCGGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCTCGGGGC31.910828025477707No Hit
AGATTTACACCCTCTCCCCCGGATTTTCAAGGGCCAGCGAGAGCTCACCG31.910828025477707No Hit
TGATGGGACTCCTTTAGTTGCAGCACCCTCTTTAAATGCCACAACCGTAG21.2738853503184715No Hit
GAAGAAGGCGTTTCAACCCGTCTGCTGGTCTACTGCGCCACGCTGATCGA21.2738853503184715No Hit
TTCTTCTGCTGACTTTGGGTTAATCTTGCTCTTTTCTTTTAGTTTCTTGA21.2738853503184715No Hit
AATCAGTAGAAATAAGTACAACTTCCACTTAAGAAAAAAGCTTCAATCAG21.2738853503184715No Hit
AGTGTGTAGAGGGAAATTTATAGCACTAAATGCCCACAAGAGAAAGCAGG21.2738853503184715No Hit
CATCAATCAGCGCCCTGTCAAAACAGACCACTCGGCTCTACCAATCAGCA21.2738853503184715No Hit
ACTCAGCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGG21.2738853503184715No Hit
CACCGAAGCCGGCCAGCGCTACCACGGGCAGATCTCCGGCGACCTGCTGC21.2738853503184715No Hit
GTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTCCA21.2738853503184715No Hit
GTTTTCCAATCAACTACCAGGGCAACACCCTTCCTAATGTGATCCAGCAG21.2738853503184715No Hit
GTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGG21.2738853503184715No Hit
GTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCT21.2738853503184715No Hit
CAATCGGGCGTTTGCCGTAATGCTTTTCCAGCGCCTGCAGGAAGATGCGC21.2738853503184715No Hit
ATATATGGGTACTTTGTAATATCTAAAAACTTAGAAACGGAAATGGAATC21.2738853503184715No Hit
CTCCGGCATCTCGGCCGGAATGACCTTCGTCATGGCTGCCGCCTGCGGCC21.2738853503184715No Hit
CTAAATAATCCATCCAATCATTAAACTAAAAGGATATCTGAACAGGGTAA21.2738853503184715No Hit
CCCTCTTTGGGACCTGTGGTTCCTGGCATCTCCAATCTTCTGGGCACTAC21.2738853503184715No Hit
GCTCTATCCATAGGAGGGTTCAACTCTGTGAGTTGAATGCAATCATCACA21.2738853503184715No Hit
GTCCACAAGAATGAGGCCTCCAAATGAAGCTGCCTGGACTACAATGAGAT21.2738853503184715No Hit
GGGGTTAGGTGTCCTCTTCTATTATTTCTCAGTTGAGCACAGAGTGACCC21.2738853503184715No Hit
GGAATGGAACGGAATGGAATGCAAAGGAATGGAATGGAATGCAATGGAAT21.2738853503184715No Hit
CTTGAGCTCTACCCTCCTTGCGCGAGGAGCGTGCGGTCCAGGTAGAGAAA21.2738853503184715No Hit
GATATGTAGATACATGTATAAAACAATTAATTATTTTAAGTTACATCTTT21.2738853503184715No Hit
CCGCTCCAGTCTCTTGGGCAGAGGTAGTCACCCCCTTCTTTTTGCCCAGA10.6369426751592357No Hit
ATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATC10.6369426751592357No Hit
GGACATGTTCTGCCTGCTCCCCAAGGTGGAATCAGTGCATAGAGTCCCGT10.6369426751592357No Hit
GATTAGTAGTAGTTACTGGTTGAACATTGTTTGTTGGTGTATATATTGTA10.6369426751592357No Hit
GTTTCAGGATTTCAGCAATGTAGAGCTATGAAATATCCATTTGGTGTTGC10.6369426751592357No Hit
ATACCATTGTGAGGATGTCAGCGCTGGTGACCCCGTGATCGAGGAAATGG10.6369426751592357No Hit
GGATGGTATTTTGATACATAGTTCTCTGAGAATACAGAGAAAGTAGTGAT10.6369426751592357No Hit
CGATTGTTCCCACCTCCACACTTCTGGCAATCCCTTTCCCCCGTCTGAAA10.6369426751592357No Hit
GTATTGAATGGAATCGTTGAGTTTACTCTAATGGGATAATCATTGAATGG10.6369426751592357No Hit
TTCCCCGCGCGTTTTTCGTTCCGCCCCCTCCCTCCTGTCGTCCCGAGCAT10.6369426751592357No Hit
CTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTT10.6369426751592357No Hit
CTTGAGGAACATGGCGTCTTGTCTCCGTGGGTGTGATGGGTCTTGCGCCA10.6369426751592357No Hit
AATATGAATCTTATATGACAAAATGTTTCATTCATTATAACAAATTTCCA10.6369426751592357No Hit
GCGAAGAAGCATCCCAAACAAAGTAATAAAACAAACTGGAAAAAAAAAAA10.6369426751592357No Hit
CACCCAAGAAAAACTCTTTAAATCCCTTTCCTCGTTAGCTCTGCTTCTTT10.6369426751592357No Hit
GGAATAACGTCTCCACGCATTCCTATTACCTAGTGGAGAGAGAACATGGA10.6369426751592357No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTGGGCTTTGAATCTCGGTTT10.6369426751592357No Hit
TGGTCAGGCCGATGACGGCCGCCTTGCTCGCGCTGTAGGCACTGGCGTTG10.6369426751592357No Hit
GGCTGGAGTGCAGTGGCATGATCTCTGCTCACTGAAAGCTCCGCCTCCCA10.6369426751592357No Hit
GCGATGGCGCCATCGTGGTGGCGCAGGGCGCGATCCGCTGGGTCGGCGCC10.6369426751592357No Hit
GTGGTTAGGAAATGCAAATGGTTTCTCTGAAGTAATTAAATTGAGTGTAT10.6369426751592357No Hit
GCATCTTTGATAGCATTGTCACTGGGGGGGTGTATCAGAAGAGTACCTTC10.6369426751592357No Hit
ATCCCGCGCTGGGGCGTTTGACGCGCCGCCGGACGCACCATAACGAGGGC10.6369426751592357No Hit
AAATAGAAGGGCAGGAAGTCCAGGCGTTCGGCGTCCGGCACCAAACGGGC10.6369426751592357No Hit
ATTCAATATAATAAAACGGCACTTCAAACAAATGCAATTGCCTTTGCCAG10.6369426751592357No Hit
GTGGCAGAGTACTTGAAGATCAGTCTCTACCAGTTCAGGCTCAGATGAGT10.6369426751592357No Hit
TCTCTGGGGTTCACACCATTCTCCTGCCTCAGTCTCCCGAGTAGCTGGGA10.6369426751592357No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTG10.6369426751592357Clontech SMART CDS Primer II A (100% over 26bp)
CCCAACTTGTTCTCGAAGTTGTGCTGTTTCTTTTTCCAGAACGGCAATTA10.6369426751592357No Hit
CCGCTGCGCGGCGTCCTCGCCACGCGGATGACCGCGCCGCGGCGGATCTT10.6369426751592357No Hit
GGCCAAGGCGAGAAGATCACTGGAGCCCAGGAGCTCAAGACCAGGCAACA10.6369426751592357No Hit
GTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGT10.6369426751592357No Hit
CTTTATAAGGTACATTTGAAGAATACAGAAATAGAAAATACCAAGCTTAT10.6369426751592357No Hit
CACCATAAATATTAAAGTGTTGAATACTAACAGTGCTGACTACAAGAAGG10.6369426751592357No Hit
GGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAG10.6369426751592357No Hit
CCTGGCACCCGCGCCGCTCGATGCGGGCGGTTCCTCGAAGCCGGCGATCG10.6369426751592357No Hit
GACTTTCCTGATTCTCCCCAGATGTAGTGAAAGCAGGTAGATTTGCCTTG10.6369426751592357No Hit
CCTCTATAGGTAAGGGGTATGTTCTGTCCTGCCCCTGGGCTTCTTTCAGG10.6369426751592357No Hit
CCCTGAGACTCTGTTATCGCTTAGTTCAAGCTTCTTAAGTTTGTTTAACT10.6369426751592357No Hit
GGTAGGTCCCCTGGTAGTGTGTAGATGCCAGCATTTCTGTTTTAATGGTA10.6369426751592357No Hit
ACTTAGGAGCAATTTGTTCAATGACACCCTAGTGACCAGAAAGAGGTATT10.6369426751592357No Hit
GCTCGCCATCATCGCCGTAACGCTGCTTGCGGTCGCGGTTGCCGTGATTT10.6369426751592357No Hit
CTATTGCAACTGAGGAACTGAATGTTTAAATATATTCAACTTTAATTTAA10.6369426751592357No Hit
GTCCAACAACCTAATGGAAATTTCCACACAGCTATCATACAGGCATCTCA10.6369426751592357No Hit
GATGCAGAGAGGGGACCGAAGGGATGGCGATCTTTAGTTCGCAGCAAGGC10.6369426751592357No Hit
TGCATTGTTTGGTTTTCTGTTCCTGTGTTAGTTTGCTGAGAATGATGGCT10.6369426751592357No Hit
CAATAGTGTAATAGTTTCTATTCAAATCTATCCTCCATTGAAGGAGTATG10.6369426751592357No Hit
GAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAG10.6369426751592357No Hit
ACTACGCAGTGTCTGGGAACGAGTTTGTCTTGTTTTTATACGAAGATATT10.6369426751592357No Hit
GCAGGAGCCGCACCCCGGGCACGCTGCTCCGCAGGCGCACGGCAGAGGAG10.6369426751592357No Hit
GGTTTGACACCATTGCAAGGACAAAAATCATTAAATTGAACCCATCATTA10.6369426751592357No Hit
CAGTGGGGCAATCTCGGCTCACTGCAAGTTGCGCCTCCTGGGTTCATGCC10.6369426751592357No Hit
AGATTTGGCAGGGTCCTTAAGACCCTAGGGTTGGGGAATGGTAAATGAGC10.6369426751592357No Hit
GTATTGGGTGCATATATATTTAGGATAGTTAGCTCTTCTTGTTGAATTGA10.6369426751592357No Hit
GAATGGAATTAACATTGAATGGACTCGAATGGAATCAACATCAAACGGAA10.6369426751592357No Hit
TCGAAAGCCCGGTCAGCGATGCCCGGCCATCCGGTACGATGTTCGGCTGG10.6369426751592357No Hit
CTCTTAGGTTTAACCAAGAACACTGAGCAGGGAAAAACCCTGCCTTTCCT10.6369426751592357No Hit
CACTTCCAACAGCGTCAATCCAGACAAGAGGAACAAGAAACTGAACTTGC10.6369426751592357No Hit
GTGAACTTTATGGTATTGTAATGTTCCCCATTCTCATTCCCCTCTCCAGA10.6369426751592357No Hit
TATCTCCACTTGCAGATTCTACACAACCAGAGTTTCCAAAGTGTTCTGTC10.6369426751592357No Hit
CTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATTGTTCACCCACTAA10.6369426751592357No Hit
CATAAATCCTCCCCAGATGAGATTTGGACAAACGCATTCTTTTTTAAAAA10.6369426751592357No Hit
CTGCTGCTTCATCTCGGTCGCAGCGCGTGCGCGGCCCGCGGCCTCGGCGT10.6369426751592357No Hit
GTTGTAGAGACTGAGATAGACTATATTTTAAGGGATCATTCTATAGTTCA10.6369426751592357No Hit
AGAATCACCAGTAGGAACAGACCAAAAAAAAAAAAAAGCCCAAATTAGCC10.6369426751592357No Hit
GTATTACACCGCTCACTATTATTGGAGCTTCCTTCAGTTTTGTTTTGTGT10.6369426751592357No Hit
AGCAGGCAGAGAAGGACCTGTTCAACTATGCGGTTCATCTGTTCTCACTT10.6369426751592357No Hit
CTTCCCACAAACCTCAACATGTGCCAGTCACCCTAAAATGCTTCACATGG10.6369426751592357No Hit
TTCCTGGTCTGATAATTTCAACATCTGTGCTATATCTCGGTCTGATTCTG10.6369426751592357No Hit
GCCTTGCATCAGCGGCGTTTCGAAAATGCCGGGCAGGATGGTGTTGACGC10.6369426751592357No Hit
ATTTCAAATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATA10.6369426751592357No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC10.6369426751592357Clontech Universal Primer Mix Long (96% over 26bp)
CTCCAGGGGAGGTGGCAGCTCTTGTGTTGTCCAGATGCCTCTGGGACACA10.6369426751592357No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT10.6369426751592357No Hit
GTTTTTGTCTACACTCTTTCTCTTTTCCTCTACCATGCTGAAGGCTGAAA10.6369426751592357No Hit
GGTATCAACGCAGAGTACATGGGAACAATAAGAACATTTGAAAATGTGAG10.6369426751592357No Hit
CCTTCCAGCCGAGCAGCGACTCTTCGATCAGCAGCTCGTTGGTCGGCGAG10.6369426751592357No Hit
ACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTGGAAAAAAAAAATCA10.6369426751592357No Hit
CTAAAAATACAAAAAAAAAAAAAAAAGTTAATCAGGCAATCCCAGCTACT10.6369426751592357No Hit
TCTCATGGGTATACCGGCCAATCCCGGTGAGGGGATAGGCCAGGAGGCGT10.6369426751592357No Hit
GGACATGTTCTGCCTGCTCCCCAAGGTGGAATCAGTGCAAAGAGTCCCGT10.6369426751592357No Hit
GTAAGGTCATTTGGTTTGGATCTGTGTCCCCACCAAATCTTATGTCAAAT10.6369426751592357No Hit
ATTCCATTCCATTCGATTCCATTCCATTGCACACGGGTTCATTCCATTCC10.6369426751592357No Hit
AATTAAAACAAAGCATCGCGAAGGCCCGCGGCGGGTGTTGACGCGATGTG10.6369426751592357No Hit
CAACTTTCCTATTTATTCTTAGTTCCAACCACATCTCCACCGTCAAATGC10.6369426751592357No Hit
CCCCCTTGCCCGTCACGCACCGCACGTTCGTGGGGAACCTGGCGCTAAAC10.6369426751592357No Hit
GTCACACAGTCCTTCCGCTTGCTGTCGCCTGCCGAACAGAACGCCATCAA10.6369426751592357No Hit
CTCTAAAGCCTATGGGGAGAGTTTGGGGCCTGTGTGAAAGGATGTAGTCT10.6369426751592357No Hit
CACTTCCAACAGCGTCAATCCAGACAAGGGGAACAAGAAACTGAACTTGC10.6369426751592357No Hit

[WARN]Adapter Content

Adapter graph