FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003674209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142
Sequences flagged as poor quality0
Sequence length146
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGGACACGTGGGAGCCGACAGAGCACGGGCGGCGGGTGATCGAGCA53.5211267605633805No Hit
TACTACAGTAGGCCTCAAAGCAGTCCAAATCTCCAATCGCAGATTCTACA42.8169014084507045No Hit
CTGTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAATT32.112676056338028No Hit
GAAGCCCACCCTAGGCAGAGGGGCCATGGCTCAGGCTGTGCAGGGCAAAC32.112676056338028No Hit
GAATACTATAAACACCTCTACGCAAATAAACTAGAAAATCTAGAAGAAAT32.112676056338028No Hit
GTCTTCCTGGTCGGCGAACTTCTTCGCCATCCGGGCGGCTTCGTCCTTGT32.112676056338028No Hit
CTCAAGAAGTCTTTGCCCATTCCAATGTCCTGGAGAGTTTCTCCAATGTT32.112676056338028No Hit
CCCGTCGTCAGCAAGCTGGAGAAGCCCACGACGCCGTTGAAGGCAATGGG32.112676056338028No Hit
GTCTAGAATAAGCAAATCCATAGAGACAGAAAGTAGATTCGCGGTTGTCA32.112676056338028No Hit
CCAAAAAAGAGCCGGCATAGCCAAGACAATCCTAAGCAAAAAGAACAAAG21.4084507042253522No Hit
CTATGATTGATACTTATGATTGAAATTGTTTTTGAATCATATAAACACTA21.4084507042253522No Hit
GCTATGAATTCATCATCCTCTCATCATATCTTGTTGCGGACTTTGTATCT21.4084507042253522No Hit
CGCTGATGCCGGTGGCGATGCTGTGGGTGGGCAAGCTGATCATCGACCGG21.4084507042253522No Hit
CTCCGCTGCCGCTCAGCAGCACGGGGCCGAGCGCGGTGCCCGCCACCCAC21.4084507042253522No Hit
GTGTCCGACTGATCTCTCAAACCCAAGCACCTTCTACAAAACAACAACTC21.4084507042253522No Hit
GTGGTATCAACGAAGTGAAGAGACAGCCCACACAATGGGAGAAAATATTT21.4084507042253522No Hit
CGCCTATGCCGACCCCGTCATGCTGCGGCTCGTCATCGAGAACCTGCTGT21.4084507042253522No Hit
ATTCTATTCGCGTTAATTGCATTCCATTCCATTCCATTACATTCCATTGC21.4084507042253522No Hit
CTCCAACACTACAACGCGTTTTGCTGTTTGGATTGTTTTTTGTTTTATTG21.4084507042253522No Hit
AGTAGAGACGGTGTTTCACCGTGTTAGCCAGGATGGTCTCCATCTCCTGA21.4084507042253522No Hit
GGAATGGAATGGAAGGCAAGAGAGTTGAATAGAATGGAATGCAATGAAAT21.4084507042253522No Hit
CCATGTGTCTTTATAGTAGCATGATTTATGATGCTTTGGGTACATACCCA21.4084507042253522No Hit
GTCCTGAGAGATGGGCGAGCGCCGTTCCGAAGGGACGGGCGATGGCCTCC21.4084507042253522No Hit
CCTACGATGCCGTCGGCAATCCGTTGTCGAAGGCAGTCACCGACACTGCC21.4084507042253522No Hit
GTGGACTGGTCGGCGGCCCAGGACGCCCTGGCGACCGAGCACCTCGCGGC21.4084507042253522No Hit
AAATGGAGTGGAATAGGGAAGAGGTAGCATTAGAGAAATGAATTCACAGT21.4084507042253522No Hit
GAAGTATTCTCAGCAGCTTCTTTGTGATGTGTGCATTCAGCTAACAGAGT10.7042253521126761No Hit
CAAAAGGGTGTGACCATTTTGGCTGCAATGTGACCATTTTGGCTTCTCTG10.7042253521126761No Hit
GCCTATGTGTTATTCACATTATGTGAAGAAATACAAATAAAAACCTGAAA10.7042253521126761No Hit
GATTCATCTGGGTTTCTCAAAGAGCTGTGAGTGAAGCAATTGCAGAAACA10.7042253521126761No Hit
GCTGTGTACCTACGAAATTACTACCACGGCGATGCGCCCCCGCATCCGCC10.7042253521126761No Hit
GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAG10.7042253521126761No Hit
GAGGACATCCGATCGCAGCACCTCGTCGGGAGTGCCAACGCGAACTTTGC10.7042253521126761No Hit
ACATAGTAGTCTTAATCTCGTAGAATCTCAGGACCTTGTTGTCATAGGGC10.7042253521126761No Hit
GTTGAAAAGGAGTCCTTTCTTTTCAATATTTTGAAGTATTTTTAGTAGAA10.7042253521126761No Hit
CGTTGATACTGCCCACGTTTCTGACGATATTCCTTACTCTGAGCGAGGGG10.7042253521126761No Hit
ATCTAATGGAATGGAATGGAATAATCCATGGACTCGAATGCAATCATCAT10.7042253521126761No Hit
GATCTGCCCACCTCGGCCTGCACCTTGGGAGGCCGAGGTGGGCAGATCAC10.7042253521126761No Hit
GTAGAGCTGCTTGTCCTTGAGCGTCTCGGGAACCTCGCCCTTGATGATCT10.7042253521126761No Hit
AAACTACCTTTTTTAAATGAAGAAGTGACATTCCCGAATAAGCAAAACTG10.7042253521126761No Hit
GTTGCAGTGAGCCGAAATCGTGCCACTGCACTCCAGCCTCTGTCTCTTAT10.7042253521126761No Hit
ATTGTGGTGTCCGCGCCAAATAGTGCTCAGGATGAAATTCGTCATGGAAA10.7042253521126761No Hit
CTTCCACCCAGGGGGCCCGGATGAAGACGGCGCGCAGCGGTCGGTCCGGC10.7042253521126761No Hit
CATCCAGGAGATGCAATGAAACTTCGTCCTTTGGCCGATCGCGTGATCGT10.7042253521126761No Hit
GCAGAGTACATGGGTTCCCTACACGACGCTCTTCCGATCTGTTCTGGTAT10.7042253521126761Illumina Single End PCR Primer 1 (96% over 27bp)
CAAGTGGCTTGTCTGTAGATTTTCCTAGATAGTTTCTTCTTCATTTTTAG10.7042253521126761No Hit
TTCAAGTTTTCAATATTACAAACAACATTCTTTTTCATGTTTCCTTACGA10.7042253521126761No Hit
GCATAGAATGGAATGGAATCAACCTGAGTGCAATGGAATGGAGTGGAATG10.7042253521126761No Hit
GTATCTCAGATGAGTAGGGATATATGAAACTAAGCATTTCTGATCACAAC10.7042253521126761No Hit
ATTATCCAAAAGGTGCAGGGAAGCTGGAAGGAGTTCAGAGACATGATGGA10.7042253521126761No Hit
AGCGGGAGGTACGCGGCCACGACCGGGGCCGGGCCGCGGACCGTCAGCCA10.7042253521126761No Hit
GTAATAGAGTGGAAAGAAGGGAATGGAATCAACCCGAGTGGAATGCAAGG10.7042253521126761No Hit
GTTTCTGAGAATGCTTCTGTCTGGCTTTTATTGGAAGACGTTTCCTTTTC10.7042253521126761No Hit
CACACACAGGCTTGAAGGATGAATGTGGGGTTTTACTGAATGGTGGAGGT10.7042253521126761No Hit
GGAATGGAATGGAATGGAATGGAATGGAATTGTATGGAATGGAATAGAAT10.7042253521126761No Hit
GAATAGAATTGAATGTAATGGCATCGAATCAATGGAATGGACTCAAATGG10.7042253521126761No Hit
CTCGCGTTGATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCA10.7042253521126761No Hit
ATGCAGCTGCCGCCAAGGCCCCTACAAGGGCACCAAGAGTGAGTCGGTGA10.7042253521126761No Hit
GAGCGAAACTCTGTCTCAAAAAAAAAGCTGGCCATGGTGGCTCACGCCTA10.7042253521126761No Hit
ATGCGATGATTCCATTCCATTCCATTTGAAGATGATTCCATTCGAGACCA10.7042253521126761No Hit
TCTCTAGTCTATAATACTCCTTAAATCTTTCAGTCTCCCCAGGGCCTTCA10.7042253521126761No Hit
GGCCAAGCCGTGTGCCCTAGCGCCTTCTCGAGGTCGTCACCGCGGATGAC10.7042253521126761No Hit
GGAATATCTTCATATAAAATCAAGACAGAAGCATTCTCAGAAACTTCTCT10.7042253521126761No Hit
GCCTGGGCAACATGGCAAAACCCCGTCTCTACAAAAAATACAAAAAAATT10.7042253521126761No Hit
GGAGTCCAATGGAAGGGAATCGAATGGAATGAAATAGAATGGAATGGAAT10.7042253521126761No Hit
GGAGCGGAATGGAATGGAATGGAAAGGAATGAATGGAATGGAATGGTGTG10.7042253521126761No Hit
GAGGATCTTGAACTCGCGCCCGTCCTTAGTGATGCGGGTCTGACGGTAGA10.7042253521126761No Hit
ATATCGTGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCC10.7042253521126761No Hit
GAATCACCTAATAGTATCTAATGGAACAATCATCGAATGGACTCAAATGG10.7042253521126761No Hit
CCCGTCGTCAGCAAGCTGGAGAAGCCCACGACGCCGTTGAAGGCACTGGG10.7042253521126761No Hit
GAATGGGAGTCAGGCAGTGCTGTTCACCGCTAAGGCCAGTGATGGTGTGG10.7042253521126761No Hit
ATTCCATTCGAATCCATTCGATGATGAGTCCATCCATTTCAATTTCATGA10.7042253521126761No Hit
TTATCAATGTTTCCTTCAAGCCCCTCCCATGGACCGCAAACTACAAACTA10.7042253521126761No Hit
TCCTTACACCTTATACAAAAATTAACTCAAGATGGACTAAAGGCTTAAAT10.7042253521126761No Hit
ATCTTGGCTCACTGCAGCCTCGACTTCCTGGGCTCAGGTGATCCTTCTAC10.7042253521126761No Hit
GTGCTGAGTGGGTAGGCACAAACAGGCATGTCTAGGCAGGAACCTGCTGC10.7042253521126761No Hit
GTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCC10.7042253521126761No Hit
GTCTTCAGCCCCTGGCCTCCATGCTCCTTTTCCCTCCGTTCATTCCTGAC10.7042253521126761No Hit
GTACGGCGGCGGCCACGGTGGTTTCCTCGTCGGCGATGGCCTGCAATGCG10.7042253521126761No Hit
GGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGA10.7042253521126761No Hit
ACCTCTTATATCTCTGTACCCTGATCCCTTGTTTCCATGCCCCAACCTTG10.7042253521126761No Hit
GCTGTAGTAGTTACATTGCCCGAAAGATGGCCAAAAAGATAGTGCCAGCT10.7042253521126761No Hit
TGCGTAGACACCTCAGTTATATTGAAGAAGCCAACTCAATTTTGGAGCAT10.7042253521126761No Hit
ATTATTTATACCCCAAATGGGAAAAAACACCCTCGTCCTGTGGGACTGCT10.7042253521126761No Hit
ATTCGAGTCCATTCGATGATTCTCTTCGATTCCATTCGATAATTCCGCTT10.7042253521126761No Hit
GTAATTAAGATCCATGAGTGCCGTATTTTGAGGCTTTGTCATCTTATTAT10.7042253521126761No Hit
GGTTAATTCCATTCCATTCCATTCCACTCTATTCCAGTCCTTTCCATTCC10.7042253521126761No Hit
GTAGGGCAAGATCTTTTAAATGTTAATTTTGTAACTAAAAGCTGGCCTGA10.7042253521126761No Hit
CATTCCATTCCTTTCCACTCCACTTCACTGCACTGCACTTCACTGCATTC10.7042253521126761No Hit
AAGTTACTCAGCATGGATTGAGTCCATCGCTATTTATTTGTTGTGACTTC10.7042253521126761No Hit
ACACCAGGCAGCGCATCGCTTCCAGCTCGGCGCGGCGCTCCGGCGCCAGC10.7042253521126761No Hit
GTCTTCTTTTCCCCTTTGTACATTAGCTACCTTCCTGTAATTCAGTACCT10.7042253521126761No Hit
CCTCGAATGGACTCTAATGGAATAATCATTGAACGGAATCGAATGGAATC10.7042253521126761No Hit
GATAGACACGCAGCTGGAGATGAGAGATAGTAATTGACTTTACATCCAGT10.7042253521126761No Hit
CTCCACGGCACTCCACGCAGATCCACTTAACTGAAGTCCATCACATAGTG10.7042253521126761No Hit
TCCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGG10.7042253521126761No Hit
TAATCACCGGCTCAATGCCTTTTGGCGCGGCAGCTTTCAGATCACCACCA10.7042253521126761No Hit
GTCCACCATTGATGAGCATCTGGGTTGATTCCATGTCTTTGCTACCGTGA10.7042253521126761No Hit
GAATGGAATGGAAAGGAATGGAATGGACTCACCTCGATTTCAATGGAAAG10.7042253521126761No Hit
CCACAAAAACAATGGTTTTATTCTCCTTCTCACTCATGATCTCTTCCATT10.7042253521126761No Hit
ATAGTATCTAGTTCTGGCATTTAAGTTTCTCAGCATAATTCTCACTTCTA10.7042253521126761No Hit
CCTCAATGACGACCCGGATCATGACCATCCGGATCGGATCGACCCACGCT10.7042253521126761No Hit
CAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCT10.7042253521126761No Hit
GCCTCTAACTATGGTAGAATAACCAGATGTGAACTTGTCTGTTTGCCTTA10.7042253521126761No Hit

[WARN]Adapter Content

Adapter graph