FastQCFastQC Report
Tue 10 May 2022
EGAF00003674513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003674513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences591907
Sequences flagged as poor quality0
Sequence length146
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC10460.17671695046688077No Hit
CTCTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTC9720.16421498647591598No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG8340.14090051308736No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG8260.1395489494126611No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT8150.13769054935995012No Hit
TCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTT8070.13633898568525124No Hit
TACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTA7230.12214756710091282No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC7230.12214756710091282No Hit
CATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATG6950.11741709423946667No Hit
CTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCACCTGAGC6640.11217978500000846No Hit
GTGTAGAGGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGCTTCCAATT6560.11082822132530955No Hit
CACCATATATTTACAGTAGGAATAGACGTAGACACACGAGCATATTTCAC6150.1039014574924777No Hit
ATCCTAGGCCTACCCGCCGCAGTACTGATCATTCTATTTCCCCCTCTATT6100.1030567301957909No Hit
GGGTAAATACGGGTCCTATTTCAAAGATTTTTAGGGGAATTAATTCTAGG6070.10254989381777879No Hit
CCTTACACTATTCCTCATCACCCAACTAAAAATATTAAACACAAACTACC6000.10136727560241728No Hit
CCTATTAGGAGCCGATCGTGCTTGTGCGCCGGCAAAACTTTTCAGGCGAA5920.10001571192771838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)