FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003675697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003675697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26
Sequences flagged as poor quality0
Sequence length100
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAACGATCGCGGCGGACGCGTATCGGCGTCAGCACCTCGGGGAAAT27.6923076923076925No Hit
GCTACCAAGGTCCGTTTTGTCTCACCTTTGCTTCTCACACGGTTGCTGAC27.6923076923076925No Hit
CCCTCGTTCCGCCGCTGTTCGGTCTGCGTAACTTCCTCCCCGGTCGTTGG27.6923076923076925No Hit
TCCCCATCCCGTGGTGCAGCTGTTCGATCCCGATCCCGGCGGTACGCAGG13.8461538461538463No Hit
GGTGAAGGTAGTTCGCGGTCGCAGTCGGTCGGCTGAGACGATCTTCGAAC13.8461538461538463No Hit
TTCCACGCGTCGTGGTGGACCCACTCGATGGATCCCTCCTTCGACTTGGC13.8461538461538463No Hit
TGCTTGGGCAACAGCTGCCAAGGATGAACACGCCTTGACATCATGGTGAA13.8461538461538463No Hit
CCCCAAGGCGACCGCCAGAATCGCCACCCAATTGACACTCATCATACGCG13.8461538461538463No Hit
GGACAACACCGCGGTATTTTTCCATACCCATGGCTCTGGCATCAAATCCA13.8461538461538463No Hit
GGATACGCCCCTGGCGCTCGAACGGCTCGCGCGTCACCGTCGGGTAGTAG13.8461538461538463No Hit
TCGCGGTCGCGTACTGCACCTGGGTCCACTCGGCGCAGTTCGGCGCCCAG13.8461538461538463No Hit
CTATCGCATCGGCGGCGCGCAGGCCGTGGCGGCCATGGCTTACGGCACCG13.8461538461538463No Hit
GGTCTTCTGCTTCACGCCCAAGGGCGACGTGATCCAGTTGCCCAAGGGCG13.8461538461538463No Hit
GGGACAGCGAGCTCGCCCACTGGCAGCAGGCGCTGGGCGCAGACCCGCAG13.8461538461538463No Hit
AGGAACTTGTCGGAGAGAATCGTGGAAATGTCCCTTCGACGCCAGTCAAT13.8461538461538463No Hit
GCCATAGGACGGTCTTTGTCAGCCAGCCAAGCGGCAAAAACGTCCTCGTC13.8461538461538463No Hit
GACAGGTCCTATTGTTCAACATCCCAACGGTAGACAACCGTCTCAAAGCG13.8461538461538463No Hit
ATCCGGTGGGCATGGCCCAGGCGATGAAGATGGCTGTGGTGGCTGGACGG13.8461538461538463No Hit
ATTGTCGGACGTGGATATACGAGATCGTCCGGAGCGCCAGCGCCCGCATG13.8461538461538463No Hit
CGGCTGGTGCTGGCCGACCCGCGCCGCACCGAACTGGCCCGCCACGCGTG13.8461538461538463No Hit
GTTCGGACGAGGTCGAGCAGGGCGAACTGATGGCCGATGTCAAGGTGATT13.8461538461538463No Hit
GCACTACATCGAGAACGCGCGGCGTTTTCGTCACGGGCTGCGGCCGCTGG13.8461538461538463No Hit
ATCAGCATCTGGTCGTTGGCACCAGTGATGATCGTCGGCTCGAAGAAGTA13.8461538461538463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)