FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003675698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003675698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26
Sequences flagged as poor quality0
Sequence length100
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTCATCGACAGTGGCAGCGGCAAAGCCGTCGCTCTCACCGTACCGATT27.6923076923076925No Hit
GCGCCCGACAGGGCTCATTTGGCCGCGCAGGAACAGCGCCAGGCAGACTT27.6923076923076925No Hit
GGTCAACTATGCGCGGATGAAGCCGGAGGTCGCCCTGAAAACTTTGCCCA13.8461538461538463No Hit
GTCAGCGACCACGATCTAGCCTCGATGAGTCGACGGGAGATCGCCCGCGA13.8461538461538463No Hit
GCTGTGCAGCAGCACCGCGGCGGCGGTCATCTCGCCGAGCAGCTCGGTCA13.8461538461538463No Hit
CGCTTCCACTCGCCACAGCCAGGTGCCTCCTCGCACTTAGGGTTGGGAAC13.8461538461538463No Hit
CGCTTCCACTCGCCACAGCCCGGTGCCTCCTCGCACTTAGGGTTGGGAAC13.8461538461538463No Hit
CCTTGGAGCTGGGCTTCAAAAGGGTTATCAAGTTGGCACAAGATTCGGGC13.8461538461538463No Hit
GTTGATCGCAGCACCGTCGGAACCATGAGGATCATGAGGGCCAACGAGGA13.8461538461538463No Hit
CTGAAGGATTCGGTGGCTGCACCAACATTGGTGAGTGCGCCTCGGTGTGC13.8461538461538463No Hit
CGCGTGGCGCGCGCCTTCGGCGACCGCGAGGCGCTGGTCGACCGCGCGGC13.8461538461538463No Hit
CTCCCTCGGACCACGGACTCGCCCAGTGATGATCCCGTCGAACGGCGAGC13.8461538461538463No Hit
CAATCAGGAGAGAGAGAACAAGAGCGATGAGGACATAGGAGACAAAGAGA13.8461538461538463No Hit
GTGTTGCGCGGTCCGGGTGAGGCAACGAGCCCGACGCGCGGCGCCGGCTC13.8461538461538463No Hit
GTGCTGCGCCACGCCCATGCCCCAGAAAATCATGCTGGCCGGCGACGTGG13.8461538461538463No Hit
GTTCTATTGTCAAGTTTTGATGGCAGTTTTGATGACAGTTCTGGGACGAA13.8461538461538463No Hit
GGATATAGAGGCCGACGCCAGCCTTTAGGGCCTGAATTTCCCGCAGTCAA13.8461538461538463No Hit
GCGGATGAAGCGGTCGCGGTCTTCCTCGCGCAGGGACCGGCGGATCGCGG13.8461538461538463No Hit
GGTGGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCG13.8461538461538463No Hit
GCACGTCGCGGCAGGCGCGCACACAGCGCGTGCACTGGATGCAGGCGTCG13.8461538461538463No Hit
GTCCACAACTGCAGGTCGCATAGGCGTCGACGTCACTGGTAGTTGGGGAA13.8461538461538463No Hit
GGGCAGGATGCGGTCCACGGCGCCCGCGACAGCATGGCCCAAAGCCGCGT13.8461538461538463No Hit
ACCCGGGGTTGCGCTTCCTCAACGGCCAGTTCACGATGATCGGCCTGCGC13.8461538461538463No Hit
CCGCCAACCGCGTGTACGTGCAGAAGGGTGTGTACGAGAAGTTTGCAGAA13.8461538461538463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)