FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003675699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003675699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCAGGCCAATGTAAGATTCACGCTTCGTGACTTGCGTTAGCCCGTGAC310.344827586206897No Hit
GGGCGAGGACCTCGTACTTGGGCGTGGTCAGGCTGGTGCTGAACCGGTCC26.896551724137931No Hit
GGTCTGGCGCGTGCGGCGCAGCGCGGTCGCGAAATGCCCCATCTCGATGA26.896551724137931No Hit
GGCATTCAAATACGCGTAAATTCGCGGGAAGGTGGCATTATCGTGTTGAG13.4482758620689653No Hit
TATACACATCTCCGAGCCCACGAGACTGCCACGAGACCATCTCGTATGCC13.4482758620689653No Hit
GTTGTCGGCGCACCAGCGGTGGAACGCCGGCCCGATCGCCACCGGGTCCG13.4482758620689653No Hit
GCATCAAGTGACTTTGGGCATGCACTCATTACCTGGTTCGAAAGTCCAGA13.4482758620689653No Hit
ACCTGATCTTCCAGGGGTTTCGGGTGAATGAAGCCAGCGACGACCACGCC13.4482758620689653No Hit
CCCCAAGGCGACCGCCAGAATCGCCACCCAATTGACACTCATCATACGCG13.4482758620689653No Hit
TAGCCGTAGCGTCCGATCGTTACCGGCACCCGGGAACGGCGCGATCAGCT13.4482758620689653No Hit
TTCCATGAGCGATTGCGGTTGCAGCCGCGTTTCGATCGGCAGCAGCCGCA13.4482758620689653No Hit
GAGTTGGAGGGGAGCTTACTCTCTAAGAGCGGTAAGTAAAGTTAAGATTT13.4482758620689653No Hit
GATTATCCCTCAACTCGTCTAGTGAAGTCGCAGTCCTGATGAGCAGACCA13.4482758620689653No Hit
GCGTCAGATGTGTATAAGAGACAGCACCCGCGTCGCGCTGGACCACCACA13.4482758620689653No Hit
ACTTCAGAGAGAAACCCGTCTGCGCGCGCTGAGAACCGATCAGCTGCCTC13.4482758620689653No Hit
CTCCAAGGTCGACGGGATCCAGGACACCGAGACCATGCTGGCCTTCCGGA13.4482758620689653No Hit
GGGCTGCGCCTGTTCGCGATGGACGGTGAGACTGCTGTCTCTTATACACA13.4482758620689653No Hit
TCATGGCGCTGTCGCCGATCGGCGCGATGATTGCGGGAGAAGGCCTGCTG13.4482758620689653No Hit
AGCCGACCGCGCCTCTCGAAAACGGACCGGGATCGGGCTGATAGTCAGCG13.4482758620689653No Hit
TCCATGAAGTACGTGGCACCGGTGCGCAAGCAGCTCGGCGTGCCCACCGT13.4482758620689653No Hit
ACCGGATATCGCGCTCCTGCCCGCCGCCGTGCAGCACCGGGGTGAGCTTC13.4482758620689653No Hit
GCCGAACCCACGAGACCGACCGAGGTTGGCTGCGCATTCGCACTCCAAGC13.4482758620689653No Hit
GAGCTACGATTGCGTGGCGTGGAGCAGCTGGGGCAGGTACGTCTGGCGAT13.4482758620689653No Hit
ATGCAGGCACGCCATTGGGCTTTACGCTGTCGGCTGGCGGGCTGATCGGG13.4482758620689653No Hit
ATCTGGAAAGCCATGGTTTGGGTCCAGGTTAGTTTGCATTCCATCTCATG13.4482758620689653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)