FastQCFastQC Report
Wed 8 May 2024
EGAF00003675773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003675773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84282
Total Bases8.4 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1410.16729550793763792No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA1330.15780356422486413No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC1210.14356564865570348No Hit
GTGCAGGACTGAGTCAGGACTCCCACGCTGGCCAGGCAGCCCTGCTCACA960.1139033245532854No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)