FastQCFastQC Report
Tue 10 May 2022
EGAF00003675788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003675788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences656344
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACACACACACACACACACACACACACACACACACACACACACA15530.23661372694806382No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT10240.15601574783954755No Hit
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC7740.11792596565215802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)