FastQCFastQC Report
Tue 10 May 2022
EGAF00003675919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003675919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564905
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC8310.1471043803825422No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA7660.13559802090617007No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC6710.11878103397916463No Hit
GTACATGGGATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGCTC6000.10621254901266583No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG5790.10249510979722254No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)