FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length100
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCCGGTACATCTCGGAGAACACCTTGATCTGGCCCTGCCAGTCGTGCT36.521739130434782No Hit
TTTGTATTCAACTCACAGATTTGAACCTTCCTTTAGAGAGAGCAGATTTG24.3478260869565215No Hit
ACCAAAAGGCACCTAGGAGGTGGGGGTGCTGGCCTAGCACCGTCATTTTA24.3478260869565215No Hit
GCTTCGCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAAC24.3478260869565215No Hit
GCGTAATGCGCTGCGCCGCGAAATACCCCTCTTGTTTGCGCAGATACGTT24.3478260869565215No Hit
GTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTT24.3478260869565215No Hit
GCGCAACAGATCATGGCGCAGAGCCGCCAGCGCAAGGCCAACGCAGGGCA24.3478260869565215No Hit
GTCGGGTCATACGTCGGCGGAATGCCTTCGGGGTTCGAGAATTTGTACGA24.3478260869565215No Hit
GGGCCGGGTGATCCTCAACTGGGACATCGTCGACGGCTCGAATCCGGGAC24.3478260869565215No Hit
GGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCT12.1739130434782608No Hit
CTGGAGAAGTGGAGATTGGAACAGCTGTCAAATCATTAATCGCATAATCA12.1739130434782608No Hit
TTCCCGTACTGTGGTTCTAACATCTTTGCCTAGCATATTACTCCCCTGCT12.1739130434782608No Hit
GAAGACGAGCGTCCCGAGGTTCGCCCGCGCGGCGTAGAGCGCGGCCGTGT12.1739130434782608No Hit
TTCCCGGCGTGGTGGATCGACCGCCACGGCGTCGGTCGCGCGAACCGCGA12.1739130434782608No Hit
GTAAACGCTTCGGGCCCCGCGGGACACTCAGCTAGGAATAATGGAATAGG12.1739130434782608No Hit
GTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA12.1739130434782608No Hit
CCGTAGGATCGGTCGCGATGTCCGACCAGCAGCCCGCCAAGCAAACACTC12.1739130434782608No Hit
AGCTCATCTTTCCCTTAGGACTTACACAGGTAGCAGAAATTACATTGGCA12.1739130434782608No Hit
GGCCCGATCAGTCGCTGCCAGTGTCGCGGAACTTACCGGACAGCTAGAGA12.1739130434782608No Hit
CGGATCTGTTGCAAACTCAGCCTCAATAAGCCTTGTCGTTGACTTTAGGG12.1739130434782608No Hit
GGGCAGATTACCTACAAGTGAGGAAATGACATCGGTCGGCACACCGGACG12.1739130434782608No Hit
GGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGTGAGGCGGG12.1739130434782608No Hit
CGCTATGCCTTCCTCTGGATTATTCCGTGGGTGGGTTGGATGAGTATAGA12.1739130434782608No Hit
ATGCCCTCCTTGAGGGGAGCCAGCAACTCGTCCTTCGTCCAAATGTGCTT12.1739130434782608No Hit
CCGCAGCGATCTGCTCCAAGCGGCTCAGCAGGGCATCGATATTGGACTTG12.1739130434782608No Hit
ACTGGCTTGTGGCGGCCAAGCGTTCATAGCGACGTCGCTTTTTGATCCTT12.1739130434782608No Hit
CAGGTATCCGTACATGGCCACCCGGTGCGCCTGGACGTGGTCGGGGTGGC12.1739130434782608No Hit
GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCG12.1739130434782608No Hit
TATGAATACATGGAAGAACAAGTAATCTTAACTGAAAAAGATCTGCTAGA12.1739130434782608No Hit
CTATACTCACAATCCTTCACAAGCAGAAAAGTTACAAAAAGACCTAAAAC12.1739130434782608No Hit
ATGTTGCCCAGGCTGGTCTCAAACTCCTGGACTCAAGCAATCCACCTGCC12.1739130434782608No Hit
ATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTATCGTTCCGCCTGGG12.1739130434782608No Hit
CGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCG12.1739130434782608No Hit
GCATGCCTCGTGGGACTTACGGTTCGTGTTGGTACGATAGTTGCGTAATG12.1739130434782608No Hit
ATTAATTAATTTATGGAGACAGAGTCTCGCCCTGTCACCCAGGCTGGAGT12.1739130434782608No Hit
GAATGGAATGTATTAGAATGTAATGAACTTTAATGGAATGTACTCGAATG12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)