FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676016

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676016
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCCGATCCCCGCGATCCGCTCGCTGAGCGACGACCGGGTGGTCTACCT36.521739130434782No Hit
GTCGTAGGGATTGCCGTGAAAGGCGCGCGCACCCACGACCAGGTTGTGCT24.3478260869565215No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG24.3478260869565215No Hit
CACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCAT24.3478260869565215No Hit
CAGATGATGGCGTCGCTGCAAGACGTGGCGGTGTCTGCCGATCCGATTCC24.3478260869565215No Hit
GTTCAGTAGGTTAGGTGTATTAAATGCATTTTCAACTTAAGATGTTTTCA24.3478260869565215No Hit
CGTGGAACGTATCTGCGCAAACAAGAGGGGTATTTCGCGGCGCAGCGCAT24.3478260869565215No Hit
ACCTCCTCCGTGCCGCCGAGCTCGGCGGCGAGCACCCGCTCGATCATCCG24.3478260869565215No Hit
ATTCTAGGCAAAGGAATCAGGCCATGCAAAGTCAGGCAGACAGACAGCAA12.1739130434782608No Hit
CTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTAC12.1739130434782608No Hit
CCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGT12.1739130434782608No Hit
GACAGGCTCTTCGACTACCGGGGCCGTCTGTCGCCCGTGCCAGTGCCCAG12.1739130434782608No Hit
GTGTGAACATATCCTCTCTTTTCACAAGAGTCCTGATGGGGCTGGCTGAG12.1739130434782608No Hit
GGTGGGGATATGATTTAAAGAAGAGGAAAAGCCAGACTCTGTATTGTGTG12.1739130434782608No Hit
ACCTTGGCGACCACGCTCGCGGCTGCTACCGCGGCGCTCCGGGCGTCGGC12.1739130434782608No Hit
CTCTATAATCACTCATCACGAAGAAGTCCTCAAGATACAATAACTTGCCA12.1739130434782608No Hit
GCTCTGTCTAAAAGAAGGTTCAACTATGTGACTTGAATACACACAACACA12.1739130434782608No Hit
TTCTGAGGCCGGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGA12.1739130434782608No Hit
TTTCGTGGTCCTGCAGTATCCTCACTGACATCCATGTAGTCACCCATATC12.1739130434782608No Hit
GTTGTGAGCTGTGTGCATGGGCGTGCCCGGCCGATGCCATCTACGTCGAG12.1739130434782608No Hit
GTGCAAGGAGGGCCGTGGGGTCTTCATCCCTGACGTGATCGCAGAACAGA12.1739130434782608No Hit
GTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGC12.1739130434782608No Hit
ATTGAATTCCATTCGACTCTATTCCGTTCCATTCAATTCCATTCCTTTCG12.1739130434782608No Hit
CTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGA12.1739130434782608No Hit
CGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC12.1739130434782608No Hit
GCCGAGGGGGGCCAGGTCACCCTCGTCACGTGCACCCTCGGCGAGGAGGG12.1739130434782608No Hit
CATCCACTCCCGCATATACATCTGCTAGTGAACTTACCACTGGCAAACAA12.1739130434782608No Hit
ACCATCTGGGGTGCCGACTGGCGTTGTCTCATCACTTTTGGGCGACTTAC12.1739130434782608No Hit
GAGGTCAGGAGTTCCAAACCAGCCTGGCCAACATGGTGAAACCCCCTCTC12.1739130434782608No Hit
GTTCTAATAGAAGACTGTATTCCGGTACTCAAGAGGTACGCCAAAGAAGG12.1739130434782608No Hit
TCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGT12.1739130434782608No Hit
GAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAG12.1739130434782608No Hit
ACATGTAACTACGATAAAGCACGAACGGCTCCTGCAATCGGACATACGCA12.1739130434782608No Hit
AGGGAGAGCCCCGCCCCGGGCGCAAGATGGGCCACATCACGGCCCTGGCC12.1739130434782608No Hit
GCCGAGGACCGCGAGGGCGGTCGCCGACGTCAGGGTCTTCATCACGCTGC12.1739130434782608No Hit
GCTCTGTCTAAAAGAAGGTTCAACTCTGTGACTTGAATACACACAACACA12.1739130434782608No Hit
GCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGA12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)