FastQCFastQC Report
Wed 8 May 2024
EGAF00003676029

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676029
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411357
Total Bases41.1 Mbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC6000.14585870667084797No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT5010.12179202007015803No Hit
CCCTCAGGAAGCTAAGAAATACTATCTCGGCAATAGGATTGTAGCCCAGG4500.10939403000313597No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC4370.1062337580252676No Hit
CAATAACACGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT4140.10064250760288508No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)