FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003676308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17
Sequences flagged as poor quality0
Sequence length100
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACCAGCTGGGGCAGCATGCGGCCCAGCAGCGTGTCGAGCAGGATGAC317.647058823529413No Hit
GTCCAGGCCCGTGTGCAGGGCGCGGGTGCCCCGGAAAGGATCGGCCCTGA211.76470588235294No Hit
TGTTCGAGCTGGCGCCCAAGATTTTTGCCGAAGCGCATGCACGGCAACCC211.76470588235294No Hit
GGAGAGGGGCTGACAGGGTTGGTTATGATCTGATAAATGCACGCATCCCC15.88235294117647No Hit
GGGCATGGGTCGTCGGGCGGATCGTCGGATTGTTCGCGCCAGGACCTGGC15.88235294117647No Hit
CTCTTCAGCCAGCCCAGGGACTTGCAGTCGGCCAGTGAGGCCTCGGTTCC15.88235294117647No Hit
TCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCCT15.88235294117647No Hit
GAATTGCCGCGGAAGATGTCGCCGAACCGGGAAGCGAGCACCGCTTTGAA15.88235294117647No Hit
GTCCGGCGGCGGGCACGGGATTTCCGGGATGCGGAAGCGCACGGCCGCGC15.88235294117647No Hit
GTTGTGCGCCGTCAACGTCGAAGAGCCCAGATTCTTAAAGGCGGTCGCCT15.88235294117647No Hit
GGAGAGGGGCTGACCGGGTTGGTTTTGATCTGATAAATGCACGCATCCCC15.88235294117647No Hit
GGCTTCCGGCGGCGCCTCAGGTCGCGGGGCGCCTAGGCCTGGGTTGTCCT15.88235294117647No Hit
CGCAGCGTCTCGTGCCCTTCGCTCTCGGGGTTCATGGCACGGACTGTTCG15.88235294117647No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)