FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676347

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676347
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173
Sequences flagged as poor quality0
Sequence length100
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA42.312138728323699No Hit
CGCTTGGATCAGTGGGAAGTGCTCACGCGCGGAGCCCACTGGGCGAACAG31.7341040462427744No Hit
CCAACATATTCATTGTCTGATGAGGGCCTGTTTCATAGATGTCATTTTGC31.7341040462427744No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA31.7341040462427744No Hit
CCAGGGAAGAGACTGAATCTTAAGCCAATACAAATTTCTACAAGAGCAGA21.1560693641618496No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACC21.1560693641618496No Hit
CATCGCGTTAGCAGGTTGCAGTAAAATTTGGCTCATAGTGTCCTCAATGC21.1560693641618496No Hit
GTCTGTTACAAGATTAATCCATAAAAGCTGCATAGAAAGAAGCGGTGTCT21.1560693641618496No Hit
GGTATCAACGCAGAGTACATGGGCAAGCAGAAGACGGCATACGAGATCTT21.1560693641618496Illumina Single End Adapter 1 (96% over 27bp)
GTCTACGGTCCTGTGGAAAGACCTGTGACCCTAGGCAAAGAGCTTAAAGA21.1560693641618496No Hit
CCTTAGAACTATGGCATATCTTTTACAATTCCTTTGAATAAGCCCCCACT21.1560693641618496No Hit
TCCCCTGCCTCCGCCTCCTGAGTAGCTGGGATTACAGGCATGCCCATGTA21.1560693641618496No Hit
GATCTACACTTTTTTTTTCGTCGGCAGCGTCAGATGCTGTCTCTTATACA21.1560693641618496No Hit
CTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCACAAAAAAAAAAA21.1560693641618496No Hit
AATTACAGGCATGCACCACCACGCCTGGCTAATTTTTGTAGTTTTAGTAG21.1560693641618496No Hit
CAACGCAGAGTACATGGGCAGCCGGTCAGTCCGGATGCCGCCAGCACGCT21.1560693641618496No Hit
GCAGCGAGGTGCTCCATCGCGACACCGACGAGCTGTTCCCCCTGCACCGG21.1560693641618496No Hit
TCTGTTATCAATCTGTAATTTCAGATCATTCAAAATCTGTCTCTTATACA21.1560693641618496No Hit
GTACATGGGCAAGCAGAAGACGGCATACGAGATCTTGCCTGTCTCTTATA10.5780346820809248Illumina PCR Primer Index 1 (96% over 28bp)
CACATACCAAAGTTGTGCTTTAATTTTTCACGGGTACTACGACCACGGTG10.5780346820809248No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAT10.5780346820809248No Hit
GCTTGACAGCTGGCAGGTTATGTCACTCCATGTGTTCCACAGATATTAGA10.5780346820809248No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTATGTTA10.5780346820809248No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACA10.5780346820809248No Hit
AGTGTAGATCTCGGTGGTCGCCGTACCCATGTACTCTGCGTTGATACCCT10.5780346820809248Illumina Single End PCR Primer 1 (96% over 27bp)
TACCTCTGCTTCCCATGTACTCTGCGTTGATCTGTCTCTTATACACATCT10.5780346820809248No Hit
AACCTCCTCCTGGATTCAAGAGATTCTTGTGCCTCAGCCTCCCGAGTAGC10.5780346820809248No Hit
TGCATCATGAGATCGGAAGAGCGTCGTGTAGGAAGTGTAGGCCTGTCTCT10.5780346820809248Illumina Single End PCR Primer 1 (96% over 25bp)
CACTTTAAGAAACTAAACAAATTCTTCAATCACGTTGACTCACAATGCAC10.5780346820809248No Hit
GGCTGAGGCTGGAAAATGTCTTGAACCTGGGAGGCAGAGGTTGCAGTGAC10.5780346820809248No Hit
CTTAAAAACAACACTCATCAAATCACAAAAAACTATGAGTACACTGTCAC10.5780346820809248No Hit
GTCATTGGAGAGCACAGATGTCTGCTTGGAGTTCCTTCTCAATATGTGCT10.5780346820809248No Hit
CGTCAGATGTGTATAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACT10.5780346820809248No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA10.5780346820809248No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG10.5780346820809248No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.5780346820809248No Hit
GCCTGGAACTGGGACCAGAGCAGGAGGGGTCCCCAGGGACTGCCTGGAAA10.5780346820809248No Hit
CAACTAGTCATTCTAACTCGGCCTAGAATTTACAGGCAAGAAGAAAAAAA10.5780346820809248No Hit
CATCAACAAACTAAACCAAAAAGACTCTAATACAAAAAAAAGATACCACG10.5780346820809248No Hit
CTACACTTTTTTTTTCGTCGGCAGCGTCAGATGTGTAAAAAAAAAAAAAA10.5780346820809248No Hit
CCAGTCCTTGCATCATGAGATCGGAAGAGCGTCGTGTAGGAAAAGTGAGC10.5780346820809248Illumina Single End PCR Primer 1 (96% over 28bp)
GACTAATATTTGTATTTTTAGTAGAGACGGGGTTTCACCACGTTGGTCAG10.5780346820809248No Hit
GGTATCAACGCAGAGTACATGGGGGGAAGCTGAGGCACAAGAATTGCTTG10.5780346820809248No Hit
ATAGGGTCTATGACATGTTTTCTAAAAATGAATGAAATGTGGGTGTCTCA10.5780346820809248No Hit
TATTTAATCTTAATTGAGAAACCACCAGGGAGACAAATTCTACTAATTGC10.5780346820809248No Hit
TATCAACGCAGAGTAAATGGGGCAATGGTATCAACGCAAAAAAAAAAAAA10.5780346820809248No Hit
GGCAGCAGCAGGCACCCATGCAGCTGCAGCAGCCTCACTTGCTGCACTTC10.5780346820809248No Hit
CGTCAGATGTGTATAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACG10.5780346820809248No Hit
AGTCGTGGCTGCGGACTTGGGCCTTTCACTCCACCTGTCTCTTATACACA10.5780346820809248No Hit
GCAGCTCTCCACCAGCTGGGTGGACTTTGGGACCTGCTTTGTGAGCCAGC10.5780346820809248No Hit
GTATCAACGCATAGTACATGGGCAAGCAGAAGACGGCATACGAGATATTG10.5780346820809248Illumina PCR Primer Index 6 (100% over 28bp)
GTACATGGGGTATCAACGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAGT10.5780346820809248No Hit
CAGCTGACCGTACCGCAAACCGACACTGGTGCGCGAGATGAGTATTCTCA10.5780346820809248No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAC10.5780346820809248No Hit
GAAATAATTTTGCCTAAAATTCAAAATGATTGACTTTTCGTTTTGGGTTT10.5780346820809248No Hit
CCACTAAAAATACAAAAATTAGCTAGGCACGGTGATACGTGCCTGTAATC10.5780346820809248No Hit
GTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAATTACTCTGCGTTGTTAC10.5780346820809248No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA10.5780346820809248No Hit
TCAACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAA10.5780346820809248No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATAC10.5780346820809248No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAATAAACCCTGGAGATTAAAAAAA10.5780346820809248No Hit
GTACATGGGCATGCTATTGGAGTCCCAGTAAGAAAGACAGCAAGAAAGAG10.5780346820809248No Hit
GATCTCGGTGGTCGCCGTATCATTCCCATGTACTCTGCGTTGATACTGTC10.5780346820809248Illumina Single End PCR Primer 1 (100% over 24bp)
GATGCCCACGCACAGGTGCCCACACACAGATGCTGGCACACACAGATGCC10.5780346820809248No Hit
GTGCTAGCCCGTCGAGACTGAAAAGCTATAACCCGCAGACCCGAGCGAAA10.5780346820809248No Hit
GTACATGGGCAAGCAGAAGACGGCATACGAGATCTTGCTTCGTGACTGGA10.5780346820809248Illumina PCR Primer Index 1 (96% over 28bp)
GGTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAA10.5780346820809248No Hit
GGTTTCATGTCGCCGGGGGCGCCGGTGGTTATGGCGACTTACCAGGGCTG10.5780346820809248No Hit
CACTGCAACCTCCGTCTCCGGGGCCCAAGCAATCCTCCCACCTCAGCCGC10.5780346820809248No Hit
GTAAGGCATTGGACATGTTATTTAATTCTTGTACTGTCTCTTATACACAT10.5780346820809248No Hit
CTCCAGAGCCCTATCTCCTCAGGCGGTCCCACATCCAAGCCCCTGCCAGG10.5780346820809248No Hit
CCCAAGTAGCTGGGATTACAGGTGGCTTCCACGATGCCCAGATAATTTTC10.5780346820809248No Hit
TCTTTTACCTGTGTCACTCAAAAGCCTTTTCAATCTTGTTTCTTACTCCT10.5780346820809248No Hit
ATCCTGGGAAGCCCCACAACCCTTCTCTGTCACAGTGTCCCTGGGTCACC10.5780346820809248No Hit
CAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAG10.5780346820809248No Hit
CAGCTGCTGGGTGTCCATTGCCATATCGGCTCGCAAATCTTTGATACGGC10.5780346820809248No Hit
GTCTTACTCCGTTGCCCAGGCTGGAGTGGCAATGGAGCAATCTCTGCTCA10.5780346820809248No Hit
GTACATGGGAAGCAGTAGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA10.5780346820809248No Hit
GGAAGTGCTGCTTTCTCGTTGATACATAAATTTTATTTTATTTTATTTTA10.5780346820809248No Hit
TCTCGGTGGTCGCCGTATCATTCCCATGTACTCTGCGTTGATACCTGTCT10.5780346820809248Illumina Single End PCR Primer 1 (100% over 22bp)
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTAAC10.5780346820809248No Hit
GTATCAACGCAGAGTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAA10.5780346820809248No Hit
GTATCAACGCAGAGTACATGGGGGCAATTCTCCAGATTACTTCCATTTCC10.5780346820809248No Hit
GTGTACAGTAATGGGCAAGTACACATATTCATTTACTTCTTCACATATTT10.5780346820809248No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTATAACC10.5780346820809248No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTATAC10.5780346820809248No Hit
AAAAAAAGCATAATACATTTATTAAAATTTAAATTTATATTATAAAAATA10.5780346820809248No Hit
GCCGAGATCTACACTTTTTTTTTCGTCGCCAGCGTCAGATGTGAAAAAAA10.5780346820809248No Hit
CAAGAAAGAAGATTTTCATCTCCTACTCCAGGTGTACCAGATCTGTCTCT10.5780346820809248No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT10.5780346820809248No Hit
AAACTAGATCTGAGATGGAAAGCTGGATGTATTCAAACTGTCTCTTATAC10.5780346820809248No Hit
TACGAGATCTTGCTTCGTGACTGGAGTTCAGACGTGTGCTCTTCCGAAAA10.5780346820809248TruSeq Adapter, Index 6 (96% over 33bp)
GATGGAGCCTGTGCTTGTATTTAATTTGCTTCAGTCAATCAGTATCATGA10.5780346820809248No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTT10.5780346820809248No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.5780346820809248No Hit
ATACTATATTGTGCGAATTGTACCGTGAGACTCATCCACCATTTATAATA10.5780346820809248No Hit
AAAAAAAGCATAATACATTTATATTTATATTATAAAAATATCCCACCCCA10.5780346820809248No Hit
GCTTCAAACCATTTCAATCCCTGAAATTGTATTAAGGTGATAAGTGAATT10.5780346820809248No Hit
AAAAAAAGCATAATACATTTATTAAAATTTAAATTTATATTATAAACAAA10.5780346820809248No Hit
CAGAAATTGACTCCTAAAGCTTTTATTCTAAAGTGCCATATATCATTTCC10.5780346820809248No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGTGA10.5780346820809248No Hit
ACGCAGAGTACATGGGCACCGAGATCTACACTTTTTTTTTCGTCGGCAGC10.5780346820809248No Hit
CGCCTAGGCTGGGTGTCACCCAGTCTTGGCTCACTGCATCCTCCACCTCC10.5780346820809248No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAA10.5780346820809248No Hit
AAATAAGAAATAAAATCATTACCTACACAACACTCTACATATCAAATCAA10.5780346820809248No Hit
CGAAAAAAAAAGTGTAGATCTCGGTGGTCGCCGTATCCTGTCTCTTATAC10.5780346820809248Illumina Single End PCR Primer 1 (96% over 29bp)
CTCCTGGATCATATCCTGAAGTATGTTTTCCAACTTGGTTCCTGTCTCTT10.5780346820809248No Hit
GAAGCTGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG10.5780346820809248No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT10.5780346820809248No Hit
ACGTGACAGAGATGCCGGCAGAGCGGCACTACCGCGACGCCCTGTCTCTT10.5780346820809248No Hit
CCTCAGGTCAGGAGTTCAAGACCAGCCTGACCAATACTGTCTCTTATACA10.5780346820809248No Hit
GTGATCCTCTTGCCTCAGCCTCCCAAATTGCTGGGATTACAGGCGTGAGC10.5780346820809248No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.5780346820809248No Hit
GCAGGAGGCTTTCTGAGGGGGCTGAGAGGCGTGGGGTACAGGCTGCCGGC10.5780346820809248No Hit
ACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA10.5780346820809248No Hit
CTTATACGCATCTCCGAGCCCACAAGACAAAAAAAAAACTCGTATGCCGT10.5780346820809248No Hit
ACCCACTTAAGTTGGTCTGGCTTCCATGTCGTCTGTCTCTTATACACATC10.5780346820809248No Hit
AGAGACAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAGATGCGTTTATACC10.5780346820809248No Hit
ATCCTATGCTGCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATT10.5780346820809248No Hit
ATGTTGATACCATTCGATTCCATTCGATGATAATTCCATTCGATTCTATG10.5780346820809248No Hit
TATCAACGCAGAGTACATGGGCATACCGGACTCATCCTGTTTAGAGACTG10.5780346820809248No Hit
GTACATGGGAGATACACACCGATTCTCTTCCCTACACGACGCTCTTCCGA10.5780346820809248Illumina Single End PCR Primer 1 (95% over 24bp)
GCGTTGATACCACTGCCCATGTACTCTGCGTTGATCTGTCTCTTATACAC10.5780346820809248No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTATAACACCCCAAGT10.5780346820809248No Hit
GTACATGGGCCTGTTGGTACCAAAAAAGGGATAGATCGGAAGAGCGGTGT10.5780346820809248No Hit
ACTGAGTGTCATGTGTCCAAAGTTAAGCTCTGCACCTGTTACACTATAGT10.5780346820809248No Hit
GGTATCAACGCAGAGTACATGGGGACGGCCCGAACACACTTTTCCCTACA10.5780346820809248No Hit
GTGATAATATAGAAAGGGTCTCCAGGGACCCAGTAGGAGTCATTTGGCCT10.5780346820809248No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACACAAAAAAAAAAAA10.5780346820809248No Hit
TCTCAGCTCACTGCAACCTCTGCCTCCCGGGTCCAAGTGATTCTCCTGCC10.5780346820809248No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA10.5780346820809248No Hit
GAGTACATGGGCAAGCAGAAGACGGCATACGAGATCTTGCTTCGGGACTG10.5780346820809248Illumina PCR Primer Index 1 (96% over 28bp)
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA10.5780346820809248No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.5780346820809248No Hit
CATCCTGGCTAACACGGTGAAACTCTGTCTCTACTAAAAATACAAAAAAT10.5780346820809248No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT10.5780346820809248No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAGTA10.5780346820809248No Hit
ACTGGCCATGTCCAGCATGCTGATGCTTATCAAGCCGCCCGCACGCACGC10.5780346820809248No Hit
TGATTCTCCTGCCTCAGCCGCCTGAGTAGCTGCGACTACAGGCATGTGCC10.5780346820809248No Hit
TGGCGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCAT10.5780346820809248No Hit
GGTATCAACGCAGAGTACATGGGCGACCACCGAGATCCTGTCTCTTATAC10.5780346820809248No Hit
ACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAA10.5780346820809248No Hit
GCATAGGGGCTCAAGGATTCCCTTGTGGACCAGCTCCTGCTGGCTTCCTG10.5780346820809248No Hit
CTCTACACTCTTTCCCTACACGACGCTCTTCCTCTCAGCAGAAGTCAAGT10.5780346820809248Illumina Single End PCR Primer 1 (96% over 32bp)
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTG10.5780346820809248No Hit
GATGCAGGCTGACAAACATTTGGGACCCACAGGTCATCTTTCTCCCTCTT10.5780346820809248No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATACCA10.5780346820809248No Hit
TCTCGGTGGTCGCCGTATCATTCCCATGTACTCTGCGTTGATACCCTGTC10.5780346820809248Illumina Single End PCR Primer 1 (100% over 22bp)
CGTCAGATGTGTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACCTGT10.5780346820809248No Hit
CGGCGTGGACTACCAGGGTATCTAATCCTGTTTGCTCCCCACGCTTTCGC10.5780346820809248No Hit

[FAIL]Adapter Content

Adapter graph