FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAACAACCATTCCGGTAGTATATCCCGCACGCTTCGCAGCTTCGAGTA34.054054054054054No Hit
GTTACATATAGCATCTCACAGTTACACTGATCTATTTTTAATTAATACCA34.054054054054054No Hit
CCATTTAATGCAAAAAACAGGCCCAAACCTCTACTTCCCACAGTGTGGGG22.7027027027027026No Hit
GAATGGAATCATCATCAAATGGAATCTAATGGAATCATTGAACAGAATTG22.7027027027027026No Hit
GCCGGCTTCTTCGGTCCGCCGGGGCTGCCTCAGGCGATTACCGACCGGCT22.7027027027027026No Hit
CGGCATCCGCGTCGTGACCGCCGCCCCCCGAAAAGCGGAACACCGCGCCT22.7027027027027026No Hit
GCTTCTCTTTCAGGTTTCTGGATTTTCTTAGGGGTTCTGAATTTATTTTC22.7027027027027026No Hit
GCGCCTGTCCGGCGACGATGTTCGCGGCTTCCTGCAGGGGCTGGTGACGC22.7027027027027026No Hit
GAACAGGTAGTCGCCCGAGGGAGAGAACAGGGCCGCGCGCGCCGGCGCCC22.7027027027027026No Hit
ATTCGACTCCATTCGATGATGATTCCATTCGACTCCATTCGATTATGATT22.7027027027027026No Hit
CATCTACACCGTCGAGCAGCTCGCCGCGGTCGAAGGCGCGGAGTTGAAGA22.7027027027027026No Hit
TTTTAGGCCAGGCGTGGTGGCTCATGCTAGTAATCTCAGCACGTGAAAGG22.7027027027027026No Hit
CACCGCCACCACCTTGTCGACGAGGGTCTGCACCGAGGCCTTTCGTGCCT22.7027027027027026No Hit
TCTCAGTAAGGGTAGCAATATTTATGACATTTTAATTTGCTGTATCCCTA22.7027027027027026No Hit
GTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAA11.3513513513513513No Hit
ATAAAAGGCTGAAAATATGGTAGTCATGTTAACATGAAAGAATTTGATAA11.3513513513513513No Hit
AGCCAGCAGCTTCAGGATGGTGGAGAACATGTGTCATGGAATGAATGAGC11.3513513513513513No Hit
TGATAGAGCAGTTATGAAACACTCTTTTTGTGGAAAATGCAAGTGGATAT11.3513513513513513No Hit
CACTCCAACTGTGGCTGAGAGGGGCCAATGTAGAGCTCAGGCTGTGGCTT11.3513513513513513No Hit
GAATTAGAATGAGGCAGCATTCTCTCAGCCCTGTCTTGCTAAATTCTAGA11.3513513513513513No Hit
CCTGCTCTTTAGTTCAGTACTGTGCCCATCAGATACCTTCTATGCACAAA11.3513513513513513No Hit
GCCCGGAGGTCGTGGCGGAGGGGCTGAAGGTCCTCCGCGAGGTCGCTCCC11.3513513513513513No Hit
TCCTTGATGTTGCCGTTCATCGCGTCCCAAGCTGCGGCAGGCTCGGCCTG11.3513513513513513No Hit
GGCCGCTGCCGCCGGCGACGACGCCGCAGCGCCCGGCCAGGTTCGCGACC11.3513513513513513No Hit
GTATGTTCCATGGCTTTTGGTTGGGAGAGAGCCCAAGCAAAAGAAAACCT11.3513513513513513No Hit
CCCCGATTCCGGTGTTGCGGCCCCTGCGGGAAACTCCGATTCCTTGGACT11.3513513513513513No Hit
GGCCGTGGATGAGGCGGCCCCACGGCCGACCCAGACGGCCCACACCGGCC11.3513513513513513No Hit
GTACTGGAGATTGTGGATTCTAAATTTGGCTTGGCACTAGCAAGCCATGT11.3513513513513513No Hit
GTGAAAGTATTGTCCAGTCCTTTTTAAGTTGGTGGCTGAGCTTGGTGAGG11.3513513513513513No Hit
TTTCTAAATGAATCAACAGATGTTCCTACAAAGTTGAATCAAAATTACTT11.3513513513513513No Hit
GTGCTGGTCACCACGGTGATGTCCATACCACGCTGGTGATCGATCGCATC11.3513513513513513No Hit
GCCCAGGGCGTCACGCACACCTACCTCATGGTCCGCGTCTACGCGGCCCT11.3513513513513513No Hit
GAGGTAACAATGAGGAGGACCTTGAGGATTAGATAGAATCTCCCAGCTGC11.3513513513513513No Hit
TAGCACTTTCATATCTCATTTTCTGTAGAATCTGAAAGTGGAAATTTGGA11.3513513513513513No Hit
GCTCGCCGAGGTTGCTGTGGCGCGTGAGCACGCCGAGCACGCGGCCGCCC11.3513513513513513No Hit
GGAGCACATGCCCGCCCATGACGAGGAACGTGAGGGCGCCGAAGCCGAGG11.3513513513513513No Hit
GTCCCTGAGTAAGACCCTTCCCTGCCATCCCCTGTCAAATGTCTGCTGCC11.3513513513513513No Hit
ATCCTGATGGGCGTCATTTTCGTCCCCCAGTTCGCGGAGAACGCGCTGCG11.3513513513513513No Hit
CGTAGAGGACCCCGGCGAGGCCGGAGAGGGCGCCGGACAGGACGAAGGCG11.3513513513513513No Hit
CCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCGCATCGCCGGT11.3513513513513513No Hit
GAGCACTTTCATATCTCATTTTCTGTAGAATCTGCAAGTGGATATTTGGA11.3513513513513513No Hit
GTAGCAGAAAATGTGCAACCTTTGGTTGAGTGAAAGTAAGTCCACATCAT11.3513513513513513No Hit
CTTCCGATCTCTGGTACCGACAGAATCTGAGGCAAGAGCGTCGTGTAGGG11.3513513513513513No Hit
CCAAAGGAGATTCCTAGCTCATTTTCCTTAGCAAGAGCTTTAAAGTGTAA11.3513513513513513No Hit
CTGCACACCAAAACTTGTTTATTAGTCAAGAAACAACAACTGCAGGCCGG11.3513513513513513No Hit
ATACTTGCAGATATAACAACAAATCCCTGTGACTAAAAAAGAAGTGGTCA11.3513513513513513No Hit
CATCATCAACAGCTCCAAGAAGCTGGATAGCGTCACGCTGACTGACGGCT11.3513513513513513No Hit
GCTCTCAAACCACAGCCTTACATTCTGATCATCTCCTTTCTTCTGCATAA11.3513513513513513No Hit
GTGTTGGGCTGGGGGACGGTCAGGTCTTTCTCATCCCACGAGTCCAATTT11.3513513513513513No Hit
ATATTAAGTTTTCTTATGGTTCTCTAGGATTTGTTGCCCTTCTTCTCATT11.3513513513513513No Hit
ACACGCTCCGCGTTCCCAATCGACATCACCCACCACGCACGAGTGATCTC11.3513513513513513No Hit
GACATAGGCATGGGCAAGGACTTCAGGTCTAAAACACCAAAAGCAATGGC11.3513513513513513No Hit
GACAGACGCTGACCACTTACAAACTACAGCATAAATCTACCAACTCATCA11.3513513513513513No Hit
AAGCACGCTCGCTCATGCCGCGCTGCGTGTAGTTCGACTGGCGACCGAGT11.3513513513513513No Hit
CTGAAGTACAGTGGAACAATCTCGGCTCACTATAACCTCTGCTTCCCGGG11.3513513513513513No Hit
GTCAAATGGTAGTTCTGTTTTAATTCCTTGAGAATGGAATTGCTGAGTCA11.3513513513513513No Hit
CATCTAACCTACCAAACATTATCGCTTAGCCTAACCTCCCTTAAATGTGC11.3513513513513513No Hit
CCGTTTGATGATGATTCCGTTCGATTCCATTTGATGATTCCATTTGATTC11.3513513513513513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)