FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG42.13903743315508No Hit
ATGTATGGTGAGCGTTAAGCCTTGGCAGTATTTTGACACGGTGCGCAGTC31.6042780748663104No Hit
GTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTGCAGCCGCTAT21.06951871657754No Hit
ACATTTATTTGTCTGAGGCTTGCAAACCTCTGGTAAGAAGCACAGAACGC21.06951871657754No Hit
CCCATGGATAATTCTCATCTGCTTGATAAAGGTGCTTTTCCCACTTTCAC21.06951871657754No Hit
CTTAATAAGGCCGTCAATGATGCCACTGACGCTGGTCGATCCTTTACTGC21.06951871657754No Hit
GAATTCAATAGCGTCAACATGTGGTAACAGTTTTTCTTTTCTTTTCTGAG21.06951871657754No Hit
GCGATTGACTGAACAAAAGGGAGAACAGCAGATTCAGAAGTAAGAGTTTT21.06951871657754No Hit
TCAGGGCCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAATCC21.06951871657754No Hit
TCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAAC21.06951871657754No Hit
ATCTTGGCTCACTGCAACCTCCGCCCTCCAGGTTCAAGCGATCCTCATGC21.06951871657754No Hit
TTACAGAACAGGCTCCTCTAGAGGGATATGAAGCACCGCCAGGTCCTTTG21.06951871657754No Hit
GTACATGGGAGCTACATTCAAGGCAAAAACGAGAAAGAGATGAAAATAAA21.06951871657754No Hit
CTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAGCTAACAT21.06951871657754No Hit
CTCAACGCTTGAGGAAGTAAAAGAAGCGGATTTAATTCTGCATTTAATTG21.06951871657754No Hit
GGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAG21.06951871657754No Hit
TGGAATAATCATTGAACGGAATCGAATGGAATCATCATCGGATGGAAATG21.06951871657754No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG21.06951871657754No Hit
GTGGAACAGCACGTTAAAAGCCTTCAAAGAGAATTGGTAGAGGGGGTTGA21.06951871657754No Hit
ATTCTGCAGTCCCAGCCTCCCGAGTAGCTGGGTCTACAGGCATGCACCTG21.06951871657754No Hit
GGTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAA21.06951871657754No Hit
CAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGAGCTGTCTCTTA21.06951871657754No Hit
TTCCATTCCATTCCATTCGATGCCATTCGATTCCATTCCATGCCAAATCA21.06951871657754No Hit
GTCCAGCGGCCTCTTCCCCTTCCTGGTGCTGCTTGCCCTGGGAACTCTGG21.06951871657754No Hit
CTACGAACGCACTCACAGTCGCATCATAATCCTCTCTCAAGGACTTCAAA21.06951871657754No Hit
CCGTACCAGTCGAGTCCATTCTATTCCAGTCCATTAGTTTCGACTCCATT21.06951871657754No Hit
GACTGGACCAATCTGCTCAAGGAAAAGGTAAAGAATTTTTTAAAGTGCAG21.06951871657754No Hit
AAAACACTCTTTACGCCGGCTTCTATTGACTTGGGTTAATCGTGTGACCG10.53475935828877No Hit
GAATAGTAATGAGGATGTAAGCCCGTGGGCGATTATGAGAATGACTGCGC10.53475935828877No Hit
ACACCTTGACCTAACGTCTTTACGTGGGTACTTGCGCTTACTTTGTAGCC10.53475935828877No Hit
GTATAATAAATTTTATTTTTCAGATTGATAAAAGTTTTATGTTTCTGAAT10.53475935828877No Hit
CTTGCAGATATTACAAAAAGAGCGTTTCAAAACTGCTCTATCAAAAGAAA10.53475935828877No Hit
GGCTAGAGCAGGTCTTCATCATGCCTTGTCTTTTTTAACTGAGAAAGGAG10.53475935828877No Hit
GAGTACATGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGATTACTCC10.53475935828877No Hit
GGACACAGAAACAAAAGGCAAACGTTTGAGCCCAGGAGTTCAAGACCAGC10.53475935828877No Hit
CTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTT10.53475935828877No Hit
TTCTCGTTCCCTTTCACGCTCCCTCTCTCTTTCTCTCCTGTCTCTTATAC10.53475935828877No Hit
GAAGGAAATGGCACCGTCATGGGTGCTGAAATCCGGCATGTTCTTGTCAC10.53475935828877No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG10.53475935828877No Hit
CCTTCGTTCTTCTTCTCCTTCTTTTCTTTTTCTTCCTTCTTCTTCTTCCT10.53475935828877No Hit
ACTTAAACTCCAGCACCACGACCCTACTACTATCTCGCACCTGAAACAAG10.53475935828877No Hit
CAATCCAGCAGCCCAGGAGGGACAGGTGGACTTAATCCTCCTCCTCGTCG10.53475935828877No Hit
GGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAGGAGGGTGACGGGCGG10.53475935828877No Hit
CTTGAGGAGGGTGACGGGCGGTGTGTACGCGCTTCAGGGCCCTGTTCAAC10.53475935828877No Hit
ACGCAGAGTACATGGGTCTGAACACACAATAGCTAAGACCCAAACTGGGA10.53475935828877No Hit
GTACATGGGGGGCCAGGCGCCGTGGCTCACGCCTGTAATCCCAGCACTTT10.53475935828877No Hit
GTATCAACGCAGAGTACATGGGTCTGAACACACAATAGCTAAGACCCAAA10.53475935828877No Hit
ACTCCTTGGCAGTCAGCCCCCTGAGTGAGAGTTGTGGGCGGTAGCCACTG10.53475935828877No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTAACAATCAAGTGTTTCG10.53475935828877No Hit
CTAATTAACACCAAATAAACTTCAAGTTAAAATATTTTAAATTTCCCCCC10.53475935828877No Hit
CGGAAGCCTGCCAGCAGCGCCGCGTAGGCGTCGGTCGCCCCGTGGGCCTC10.53475935828877No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.53475935828877Clontech Universal Primer Mix Long (96% over 26bp)
CTCGGTAGGTTTGTCGCCTCTACCTATAAATCTTCCCACTATTTTGCTAC10.53475935828877No Hit
GGCCGAGCACCACCACGAGCAGCACGGCGAAAAGAACCCAGGCGCGGGTG10.53475935828877No Hit
GTTCAAGACCAGCCTGACCAACATGGTGAAACCCAGTCTCTACCAAAAAT10.53475935828877No Hit
AAGTACGCGCAAGTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCAT10.53475935828877No Hit
TATCAACGCAGAGTACATGGGCAAGCAGAAGACGGCATACGAGATCTTGC10.53475935828877Illumina PCR Primer Index 1 (96% over 28bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTGCTTTCAAAAGCCATT10.53475935828877No Hit
TAAATAAAATTGGCCTCAGGTTTTAGCAGCCAGTTTCAGCAGCCAGACTT10.53475935828877No Hit
CCTGTAATCACAGCACTTTGGGAGGCCGAGGCGGGCGGATTACCTGAGGT10.53475935828877No Hit
AGCGAGGCTTGCTAGAAGTCATCAAAAAGCTATTAGTGGGAGTAGAGTTT10.53475935828877No Hit
CCTCATGGGCTACACCTTGACCTAACGTCTTTACGTGGGTACTTGCGCTT10.53475935828877No Hit
GTGCTAACTCTTTAATAGCCTTCAGTGACTGTGAGATGCCGTCTACGAGT10.53475935828877No Hit
ACGCTCTTCCGATCTGGTACCAACAGGTCCTGAAAAAAAAAAAAAAAAAA10.53475935828877No Hit
GTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAA10.53475935828877No Hit
GGGGGATCTGGGTGGCGCATCTCCATGTTACCACATCCGGAATCAAAAAG10.53475935828877No Hit
CGAGTGATGTGGGCGATTGATGAAAAGGCGGTTGAGGCGTCTGGTGAGTA10.53475935828877No Hit
GGCTAATCCTAGCCTCATCAGATTAAGTTTCCCTGTCTTGTCATTTCCGA10.53475935828877No Hit
CTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTTACCAT10.53475935828877No Hit
TGGTATTCTGCCCGTTTTCCATGGCTTCCCTCAGCCCTGCTCTGTTTATT10.53475935828877No Hit
CCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCAGTTGACAC10.53475935828877No Hit
TGCGTTAACTAGGCTTTAAATGACGCAATTCTCCCTGAGTCATGGATTTC10.53475935828877No Hit
ATGAATATGAATACTGTGACAAATGGTAGCACCAATCCTGGGACAAGCCC10.53475935828877No Hit
GCCCCATAGAGACCCAAGTTCTGCGGGAGGCTGAGGAGCACCAGGAGACC10.53475935828877No Hit
GAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCAT10.53475935828877No Hit
ACGCAGAGTACATGGTCTGAACACACAATAGCTAAGACCCAAACTGGGAT10.53475935828877No Hit
GGCTGAGCAAGAGGTGGTAAGGTTGATCGGGGTTTATCGATTACAGAACA10.53475935828877No Hit
TCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGC10.53475935828877No Hit
GTACATGGGAGCGGGAGGTTAAGGGCCCCACCCCCAAAGTGGTGATCGTG10.53475935828877No Hit
GTGGGAAACACTTTGCATCACCCAGCAAGCTGAAACGACATGCCAAGGCC10.53475935828877No Hit
ACACCATTGTGTCCAACTGTATATAGCTGCCAATTAGTTTTCTTTGTTTT10.53475935828877No Hit
GGACCATGAAGACGGTGACGGGACACGCAGCGCGCTCGCACGAGCGGCGC10.53475935828877No Hit
CCTTTACCTCTTCTAGATCTTTCTGTAGCTCTTCTGAAGCCATGGGGGCT10.53475935828877No Hit
GCTAAAACTGCTTTTAAAGTTTCAAAATAATAATAATCACATGAAAACCA10.53475935828877No Hit
GTACATGGGATGTTGGCAATGTTTTTGGTTCATTTAGAGCAGTAGAATGT10.53475935828877No Hit
ATCTTACTAATTTACTTATTTACTGACTTGTTTTTGGTGACTAGGCTTAG10.53475935828877No Hit
TAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCCTGT10.53475935828877No Hit
AAGTAAGCGCAAGTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCAT10.53475935828877No Hit
ATATATAGGAAAAGGGAAGGTAGAAGAGCTGAAGGCACTCGTGGAAGAGC10.53475935828877No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT10.53475935828877No Hit
TACTTGAGGAGGGTGACGGGCGGTGTGTACGGGCTTCAGGGCCCTGTTCA10.53475935828877No Hit
GGTGTACACCGCCCTTAGACGTCTTGGTATACGGACAACTGATGGACCCA10.53475935828877No Hit
CATTTATTGACGGGGTTTCCCACAGGGTCCGCAGTCAAAGAATCGCTGAA10.53475935828877No Hit
ATCTGATTCCATTCAATGAATCCATTCGATTCCATTCTATGAGGATTCCA10.53475935828877No Hit
CCCCCAGGATGCCCCTGACCTCCTCCCGGCATCTCTCTTGATGCTCAGGG10.53475935828877No Hit
TGGTAAAAGGGTAGCTTACTGGTTGTCCTCCGATTCAGGTTAGAATGAGG10.53475935828877No Hit
CCTGCGTTTCCTGCATCGACACTCGGCTTGTAAGCCAATGCCGCGAATGC10.53475935828877No Hit
GCATGCATGTGTCTGTGTTGCGGGTGTGTGTTCCTGCATGCGATGGTTCC10.53475935828877No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.53475935828877Clontech SMART CDS Primer II A (96% over 26bp)
TTCTGAGGCTTTAGAAATGTGGACAAGCTAGTTTTCAAATTTTGTGTGCG10.53475935828877No Hit
CCATATTGACAAACTAAAGAAAACACATGAACAAAAATGTGTGAAAAGTG10.53475935828877No Hit
GGCCATATGTGAGCATCCATCCTTGAACGAGATCACAGGAGTCATCTGTC10.53475935828877No Hit
GTTCAGTACCATTGGTGGCCAATTGATTTGATGGTAAGGGAGGGATCGTT10.53475935828877No Hit
GACGTGAAGTCCGTGGAAGCCTGTGGCTACAAAAAATGTTGAGCCGTAGA10.53475935828877No Hit
ACTTAAACCCAGGTGGCAGAGGCTGCAGTGAGCTGTGATCGTTCCACTGC10.53475935828877No Hit
ACGCTCTTCCGATCTATCCCTTTTTTGGTACCAACAGGCCCATGTACTCT10.53475935828877No Hit
GTATACAAGTCGGGGGAAAATTCATCACACGGGATGCTTAAGATTTATGT10.53475935828877No Hit
GCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA10.53475935828877No Hit
CTCATCTTCATCTCCATCCTCTTCCTCACCATCACCTTCTTCTTCCTCCT10.53475935828877No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGA10.53475935828877No Hit
GCCCTTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTGAGAG10.53475935828877No Hit
GGCTGATGGTTTCGATAATAACTAGTATGGGGATAAGGGGTGTAGGTGTG10.53475935828877No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.53475935828877No Hit
CAACGCAGAGTACATGGGTACCAAACCTGCATTAAAAATTTCGGTCTGTC10.53475935828877No Hit
GGACCGGACGTCGTTGCCCGAGATGCTCGAGCAGCTCGGCGTGGTTCACA10.53475935828877No Hit
CTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCTTGCCT10.53475935828877No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTAG10.53475935828877No Hit
GGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAA10.53475935828877No Hit
GTGAAGGACCTGTGCTTCTCCGTCAGCTTCACCATCATGGGCGAGAGCTC10.53475935828877No Hit
GATTTCCGATGTTGCTGCATCTTTAAGAAGAAACCTTTGTCTTCTAGTTA10.53475935828877No Hit
CTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAG10.53475935828877No Hit
GCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGG10.53475935828877No Hit
GGGATCGTCCGCAGGATTGGGACTGATACAGAGGCCGCCACGGAGCCCGC10.53475935828877No Hit
CCCAATGCACTTTTTCTGTTTCTTAGTGTCTTGGTTCTCAATTTCATTCT10.53475935828877No Hit
TATACACACCACACATAACACACATACCACACAGATACATAAACACATAC10.53475935828877No Hit
CTTCAGGGCCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAAT10.53475935828877No Hit
GTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGGAGGAG10.53475935828877No Hit
GTTAAAGTATCCATATTACCCAGAGCAATCTTCAGACTCAATGTGATCCC10.53475935828877No Hit
TTCCTAAACAGTTCGCTGTTCTTATCAGCCAAGAGTTTGAGGAAGCCGGT10.53475935828877No Hit
TGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCC10.53475935828877No Hit
ATAGTCATGCTGACTGCGGGCGTCGACGCACAGCGTAGTAAAAGAGACCG10.53475935828877No Hit
CATATATTGGGGTAAGCACAAAATATTTCGACTAGAGGGGTGCAAGCAAG10.53475935828877No Hit
CCTTGTCCTAAACTATTTGTTGTCAAAAGCAAACGAATAGGGGGAAGCCA10.53475935828877No Hit
GGCGGCGGCCAGGCGCTGGAGGTGCTGGCCGCCGAAGACGCCTGGAACTC10.53475935828877No Hit
CCCCAAAGAGAGGCCAGAATTGGGCTTCCAAAGAAATCAGATGCCCTTGC10.53475935828877No Hit
ACTCCTTGACGTTGACAATCGAGTAGTACTCCCGATTGAAGCCCCCATTC10.53475935828877No Hit
CCTCTGCAGGCAGGGTCGACCTCACGTCCTTCTTGTACTCCTCTTTCTTC10.53475935828877No Hit
GTACATGGGAGAGAGACTGAGGCAGGCGACTGAATGCACTAACAGCAGCA10.53475935828877No Hit
CACTACACTACAAAAAAAAAAAAAAAAGTACCTGCAAAAAAAAAAAAAAA10.53475935828877No Hit
CGTTTAGTAAATGCGTTAACTAGGCTTTAAATGACGCAATTCTCCCTGCG10.53475935828877No Hit
GATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCA10.53475935828877No Hit
ATTCAGCACCATGCGGACGAGCTCCGCCCCATGGGCCCGTCACCCCGACA10.53475935828877No Hit
TTTCTTGCCACCTCATGGGCTACACCTTGACCTAACGTCTTTACGTGGGT10.53475935828877No Hit
CCAAAGAGCTGTTCCTCTTTGGACTAACAGTTAAATTTACAAGGGGATTT10.53475935828877No Hit
GGGCAAGGGCATTGCGGGACGGCAGGACATCCTGGACGACAGTGGCTACG10.53475935828877No Hit
GTATCAACGCAGAGTACATGGGGCGCTCGCACCGGCCCAACATGGAGCTG10.53475935828877No Hit
ACCCTGGGGTTAGTATAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTT10.53475935828877No Hit
TAGCTTAGTTAAACTTTCGTTTATTGCTAAAGGTTAATCACTGCTGTTTC10.53475935828877No Hit
GTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAGAAGCCGGCG10.53475935828877No Hit
TGGTTTCACTGATTCAAGGTATTTTTTTAATGATTCTTCAAGTGAAGGAA10.53475935828877No Hit
CCTTGGAATTTGTCAGCTTAACAACTTCTCGACATGTTTTTATAGCCAAA10.53475935828877No Hit
CTGCCTTTAAAATCTCTCTGGAGAGATGCCAAGATTCAGTAAGACATTTT10.53475935828877No Hit
CTACTGACACTTTGAAAAATTGCTGCTCACATATAAACTTAGAACAAGCA10.53475935828877No Hit
TTCTTCTACAATGATGCACTTTTTGTCTGCACTGAGACAAAAAATGACAG10.53475935828877No Hit
AGATTCTATCTTGGACAACCAGCTATCACCAGGCTCGGTAGGTTTGTCGC10.53475935828877No Hit
GCGTCAGATGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAACAG10.53475935828877No Hit
ACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCGCC10.53475935828877No Hit

[FAIL]Adapter Content

Adapter graph