FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences187
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAAAATGAAGTGTGAAGTTCTGGGGAGAGCAGGCCACAGCCTTCCAGTC31.6042780748663104No Hit
CCCTGATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTAG21.06951871657754No Hit
GCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCC21.06951871657754No Hit
AGCACAGAGAGTTCTCCCAGTAGGTTAATAGTGGGGGGTAAGGCGAGGTT21.06951871657754No Hit
TCAGGGCCCTGTTCAACTAAGCACTCTACTCTCAGTTTACTGCTAAATCC21.06951871657754No Hit
GTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAA21.06951871657754No Hit
GCGCTTACTTTGTAGCCTTCATCAGGGTTTGCTGAAGATGGCGGTATATA21.06951871657754No Hit
GAATGGAAGTGAATAGAATCGAACTAAATCGAATGGAATGGAATTGATAG21.06951871657754No Hit
GTCAGCCGTGGTCATGCCACTGCACTCCAGCCTGGGCTACAGAGCGAGAC21.06951871657754No Hit
GATATGGGGAGTAGTGTGATTGAGGTGGAGTAGATTAGGCGTAGGTAGAA21.06951871657754No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT21.06951871657754No Hit
GATGATGAGTCCATCCATTTCAATTTCATGATAATTCCATTCGTTTCAAT21.06951871657754No Hit
GAGCAGGGCCTGCTGCTTCCCTGGCGCTGCTCCCAAAGATTTCTGACTCA21.06951871657754No Hit
GTGCATGCCTGTAGACCCAGCTACTCGGGAGGCTGGGACTGCAGAATCTG21.06951871657754No Hit
GAATGGAATGCACTGGAATGGAAGGGAGTGTAATGGAAGGTTCTCGGAAA21.06951871657754No Hit
CTTTCTGGATGACACCAAACTGGTAGAGAGATTGGAGGCAACAAAGACCA21.06951871657754No Hit
GGTCAGTAATTCTGGGCCAGGCACAGTGGCTCGTATCTTTAATCCCAGCA21.06951871657754No Hit
CCTCAGATGATCTCACTGCTCAGTGAAAACTCTTACTTCTGAATCTGCTG21.06951871657754No Hit
ACGATAGCCCTTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAAC21.06951871657754No Hit
GTACATGGGGAGCTCTCAAGAGCTACTTTAGCCTTGCCATTCCTCTTGCT21.06951871657754No Hit
CTCTAGAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGCTGTCTCTTA21.06951871657754No Hit
GATCCAGGCATTTGATGCCACAAGTGTCAGGACAACATCTCTTCTTCCCT21.06951871657754No Hit
CTTTTCCATCTTCCCTTAAAATGCTTGCTAATGTCAAAAGTTGTTCTTGA21.06951871657754No Hit
TAACAGTTCTTGGCGCAAATAGCGCTGAATCGCTTCTTTAAAGGCTGCAG21.06951871657754No Hit
GAAGATGGCGGTATATAGGCTGAGCAAGAGGTGGTAAGGTTGATCGGGGT10.53475935828877No Hit
CCACTGTGCCCGGCCAGCAAGTAATTTTCAATCCCCAAGGATGTGGGATA10.53475935828877No Hit
GTATACCCCCGGTCGTGTAGCGGTGAAAGTGGTTTGGTTTAGACGTCCGG10.53475935828877No Hit
ATCTGAACTACTGCCTGCATTCCTCTTCCTTCGCGGCATTGCCGGCGGCT10.53475935828877No Hit
CTTCAATCAGCCACATAGCCCTCGTAGTAACAGCCATTCTCATCCAAACC10.53475935828877No Hit
GCGTGTGCCTACCCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCAT10.53475935828877No Hit
CCTCTATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATAC10.53475935828877No Hit
GATTACAGGTGTGAGCCACCACGCCCAGCCAAAAAAAAAAAAAAAGATTT10.53475935828877No Hit
AATCTCTACTCCTCTGAGGATGGATAGCAACATCCTTTCAAAACCCTTTC10.53475935828877No Hit
GTTCGAACGCTTATCGTCCGACAGGCCGGGGATTTGCTTGGCACCAGAGT10.53475935828877No Hit
GGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAATGCTTTTAGAT10.53475935828877No Hit
GAGTGCAAGTAGCTGATGAAGTATGTCGCATTTTTTATGACATGAAAGTT10.53475935828877No Hit
GTAGTAAAAGCACGCAACGTGCCTGGTACTATGCATGGAATAGTAAGATG10.53475935828877No Hit
GACATGAGAAGGTTGCCAATGGGCTGTTGGGCGACCAAGGCCTTCCCGGA10.53475935828877No Hit
GTAGGTGCCTGCATTCTTGTAGGCGCTCACGTAGCCACTGTCGTCCAGGA10.53475935828877No Hit
GCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAA10.53475935828877No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.53475935828877No Hit
AAGAACACTTTCATATCACAGGCTTCCTGAAAGTCTGGAGAGCTCAAGTT10.53475935828877No Hit
CCTTTGAGTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTT10.53475935828877No Hit
GTACATGGGCAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAAT10.53475935828877No Hit
TTCACGAGTAGCTGGGATTACAGGCATGCACCACCACGCCTAGCTAATTT10.53475935828877No Hit
GTCACCGACTTAGTCCAGTTCCCTGTGATCTCAAAACAATTGTTGCAGCA10.53475935828877No Hit
CTCCAGTCACGAAGCAAGATCTCGTATGCCGTCTTCTGCTTGCCCATGTA10.53475935828877Illumina PCR Primer Index 6 (96% over 28bp)
GAAGAAAGAAGGAGAAGAAGAAAGAAAAGACGAAGAAGGAGAGGAGGAAG10.53475935828877No Hit
GATTCTGACCAAATTGTTTGGAGTGGGAATTTTAGTTTATCTGTGAGCAC10.53475935828877No Hit
ACGTAGCACCGCCCGATTCGCGTGAGCATGGACCGCTGCATTGAAGAGAG10.53475935828877No Hit
GATCATGGCTTCCCCCTATTCGTTTGCTTTTGACAACAAATAGTTTAGGA10.53475935828877No Hit
AAGAAAAGGTGAATCTCCTTGAGGATCTTCTGTTTAAGGAAGCAGGGAGA10.53475935828877No Hit
GACCCCGGGGAACAGTCGCATGACTAGGCAGTTTCCAGAAACGTGTATCA10.53475935828877No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.53475935828877Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTTATACTAGTATCCTTAATCATTTTTATTGCCACAACTAACCTCCTCGG10.53475935828877No Hit
CTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGC10.53475935828877No Hit
CTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAG10.53475935828877No Hit
ACCGAAATTTTTAATGCAGGTTTGGTACCCATGTACTCTGCGTTGCTGTC10.53475935828877No Hit
AGCCTGTTCTGTAATCGATAAACCCCGATCAACCTTACCACCTCTTGCTC10.53475935828877No Hit
CTCCTTTCTCAGTTAAAAAAGACAAGGCATGATGAAGACCTGCTCTAGCC10.53475935828877No Hit
GGAGCCTGAGGCAGGAGAATCACTTGAACTGGGGAGGTGGAGATTGCAGT10.53475935828877No Hit
GGAAGGAAATGGCACCGTCATGGGTGCTGAAATCCGGCATGTTCTTGTCA10.53475935828877No Hit
CTTCAGCAAACCCTGATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTA10.53475935828877No Hit
GGATTACTCCGGTCTGAACTCAGATCACGTAGGACTTTAATCGTTGAACA10.53475935828877No Hit
ATACAAATAAAATGTGTATAAACAAATCCACATTGAGTCATAACACAGAT10.53475935828877No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA10.53475935828877No Hit
ATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTA10.53475935828877No Hit
TATCAACGCAGAGTACATGGGCCTGTTGGTACCAAAAAAGGGATAGATCG10.53475935828877No Hit
GACCTAACGTCTTTACGTGGGTACTTGCGCTTACTTTGTAGCCTTCATCA10.53475935828877No Hit
CACCAGCCCGCTGCACCCTGAGGCACTGGGTCTCCTGGTGCTCCTCAGCC10.53475935828877No Hit
GAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCC10.53475935828877No Hit
CCACATACACACCACACACACATATACACACCACATAGCACACACAACAC10.53475935828877No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGAT10.53475935828877No Hit
ATTCTAGAGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCA10.53475935828877No Hit
ATTCTGCCTAGCAAACTCAAACTACGAACGCACTCACAGTCGCATCATAA10.53475935828877No Hit
AAGTTGAGATGATATCATTTACGGGGGAAGGCGCTTTGTGAAGTAGGCCT10.53475935828877No Hit
GGGTTTATCGATTACAGAACAGGCTCCTCTAGAGGGATATGAAGCACCGC10.53475935828877No Hit
CTGCTGCCGATCCTGTTCAGCGTCGGAGCCAACCTGGTGGCAGCCGCCAT10.53475935828877No Hit
AACCAGGCAAGAGTTCAATCGCTTAGTTTCGTGGCGGGATTTGAGGAAAA10.53475935828877No Hit
CGATACGGTTGTCCATGAAGGCCCAGAGCTGCTTCTTCAGGCGGTAGTCG10.53475935828877No Hit
GAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCAT10.53475935828877No Hit
CTCCAAACCTGCTTGCTTGCACCCCTCTAGTCGAAATATTTTGTGCTTAC10.53475935828877No Hit
GTACATGGGAAGGAAAAGATAAAAGGTTTCTAAAACATGACGGAGGTTGA10.53475935828877No Hit
CTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCA10.53475935828877No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGGAAATTTTTGTA10.53475935828877No Hit
CAATCGATGCCATTAAACAGCATTGTGATGTAATGAACGTGGACGCTGTT10.53475935828877No Hit
ACCTTGACCTAACGTCTTTACGTGGGTACTTGCGCTTACTTTGTAGCCTT10.53475935828877No Hit
ACACCATATAGCTCAAGTTCAGTGACTCAAGAGGGCCTGCGTCTCCCCAA10.53475935828877No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA10.53475935828877No Hit
AAACACAGTTGTATAGGTTCTTCCACAGCCTTCTCTTGGACAGCGACATA10.53475935828877No Hit
GTACATGGGTTGTGTTTCTGAGAAAGGAAGAGAGGATGGTGATGCACCGG10.53475935828877No Hit
ATGCATAGGAACTCACAAAAACCTTCTCTTCATCTTGGCTTCTGCTGATA10.53475935828877No Hit
GCGTGGGCCTGGCCGGACGCGCCGCGGAGCGGCTGGTGTTCGGCGAGCAG10.53475935828877No Hit
GGTGCACACTGCCACGCCCGACTAATTTTTGTATTTTTGGTAGAGACTGG10.53475935828877No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTAACT10.53475935828877No Hit
CTACAGGAGAAGCTCTGGGACTGGGGCAGCAGCAAGGCGCCCATGCCACA10.53475935828877No Hit
GTTTTAAGCTGTGGCTCGTAGTGTTCTGGCGAGCAGTTTTGTTGATTTAA10.53475935828877No Hit
ATCGATTACAGAACAGGCTCCTCTAGAGGGATATGAAGCACCGCCAGGTC10.53475935828877No Hit
GCATGTATTAGAATTTCATTTCTTTTGTATGTATATATCATATTTTGTTT10.53475935828877No Hit
GTATCAACGCAGAGTACATGGGGGTGGCGGCGGCTGCCTCGCGAAGGTTC10.53475935828877No Hit
CTATGATGGTGGGGATGATGAGGCTATTGTTTTTTGTGAATTCTTCGATA10.53475935828877No Hit
CTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACT10.53475935828877No Hit
GTGCTACCATTTGTCACAGTGTTCATATTCATAGTTGTGGCTATCTTTGG10.53475935828877No Hit
GTCTTCGTTCAGCCACGGGTTTGGACAATGCGGATTATCCACTTCAGGTA10.53475935828877No Hit
CAGTTAAATCAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAA10.53475935828877No Hit
TCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGACA10.53475935828877No Hit
ATTATATGATCTGTAGATTTGCAATTTATAGGGGATTGAGGAAGTTCCTT10.53475935828877No Hit
GCGCGCGGCCGAAATTTACCCAACAACCATTAACAAGAAAAAACCCCACA10.53475935828877No Hit
CCCCGAAACCAGACGAGCTACCTAAGAACAGCTAAAAGAGCACACCCGTC10.53475935828877No Hit
CAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.53475935828877Clontech SMART CDS Primer II A (100% over 23bp)
GAGAGAAAGAGAGAGGGAGCGTGAAAGGGAACGAGAACTGTCTCTTATAC10.53475935828877No Hit
CCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGA10.53475935828877No Hit
GTTCGAACGCTTATCGTCCGACAGGCCGGGGATTAGCTTGGCACCAGAGT10.53475935828877No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAATGAAATG10.53475935828877No Hit
ACCTCTTGCTCAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGG10.53475935828877No Hit
CTTGCACAGCATCCTTGATTCTTGCTCGCACAAGGCTGTCCAAAATCTTG10.53475935828877No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTAT10.53475935828877No Hit
CTACAATACTTGGCACTTTCCTGTTGATTTTATGCTGACAATAACGTAAG10.53475935828877No Hit
GTACAAAATTAGTACACAAAAATCAGTAACATTTCTCAGCACAAGCAACA10.53475935828877No Hit
CAACAAAACTTTATTTACAAAAGCAGGCAACAAGCAAGATTTGGTCTGCA10.53475935828877No Hit
GACCGCGGACTGCTCGATACCGCGCACCACCACGACGTCCCCCGCGGAGA10.53475935828877No Hit
GGACCCGAATGGAATCATCATCCAACGGAAGCTAATGAAATCAACATCGA10.53475935828877No Hit
GGGCTAAGCATAGTGGGGTATCTAATCCCAGTTTGGGTCTTAGCTACTGT10.53475935828877No Hit
TCTCTTTAAATGGAAGAATTTAGACTCATGTCAAAGGCCATTCTTCTAAA10.53475935828877No Hit
GTGCCCCACCATGTCAGACGCAGCCGTAGACACCAGCTCCGAAATCACCA10.53475935828877No Hit
ATATGGAGGATGGGGATTATTGCTAGGATGAGGATGGATAGTAATAGGGC10.53475935828877No Hit
AGAAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAACCAGACG10.53475935828877No Hit
CCTGTAATCCCAGCTACTTGGGAGGCTGAGGCACGAGAATTGCTTGAACC10.53475935828877No Hit
GTATATAGGCTGAGCAAGAGGTGGTAAGGTTGTTAGGGGTTTATGGAATA10.53475935828877No Hit
CTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCAGTTGAC10.53475935828877No Hit
GTACAACTGTTTGGCATAACAGGTTTCCAGTAAATAGGCATGGAGTTGCA10.53475935828877No Hit
CCTGTAATCCCAGCTACTTGGGAAGCTGAGGCAAGAGAATCGCTTGAACC10.53475935828877No Hit
GTAAGCGCAAGTACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGA10.53475935828877No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.53475935828877Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAATTA10.53475935828877No Hit
GCCCATACTCGCCGATCAGCTTCAGCTCTTGGTCGAGACGAGATTTCTCG10.53475935828877No Hit
GATCGGCCGATGGTGCAGTAGCCGGAGCAGCAGGTGCGGGCGCGGGTTCA10.53475935828877No Hit
CAACAAAACTAACTAATACTAACATCTCAGACGCTCAGGAAATAGAAACC10.53475935828877No Hit
AGAAAATGTAGCCCATTTCTTGCCACCTCATGGGCTACACCTTGACCTAA10.53475935828877No Hit
GTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAAT10.53475935828877No Hit
CCACTTTCGTAGTCTATTTTGTGTCAACTGGAGTTTTTTACAACTCAGGT10.53475935828877No Hit
GCTGAGACCACAGGCATGCACCACCAAGCCCAGCTATTTTTTTTGTATTT10.53475935828877No Hit
AGTCCAAGACAGCGAGGAAATCGGTTTCTCCCAAGCTCTCTCCAGTGATC10.53475935828877No Hit
TTTCTGGATATTGTCCTTTCTGCCAAGGATGAAAGTGGTAGCAGCTTCTC10.53475935828877No Hit
AGGCTGGAGTGGCGTGGTCTTGGCTCATTGCAACGTCCCCATCCTGGGTT10.53475935828877No Hit
CGATTTTAGAATGTTTTTCTGCACACTTCCAGGTGGAAAATTATTCTACT10.53475935828877No Hit
GCGCGGGGGCGTCGTTTAACCACGAAAAAATAGCTACCAAACACCGCAGA10.53475935828877No Hit
GCCTAGCCACACCCCCACGGGAAACAGCAGTGATTAACCTTTAGCAATAA10.53475935828877No Hit
ATCACTATCACCTTGAGAATATGGAGGCTTAGAGACAAAAAGAAAAACAA10.53475935828877No Hit
GACTGTGACCTTCATATACCTCACTTAATCTACTGACCACCAAGAAGACA10.53475935828877No Hit
TTGCAGCTGAGCCAGCTCAATTTGAAGTTTGCCTTCTCTCGTTCTCGCCC10.53475935828877No Hit
GCTTTCAGGCCTAAGGTGAAAAAGGAAATATCTTCCCCTGAAAACTAGAC10.53475935828877No Hit
GTCCTCAGCCATTCAGCACCATGCGGACGAGCTCCGCCCCATGGGCCCGT10.53475935828877No Hit
GTCCATTCTTAATTCTCATTCCCTGATTCAATGGTAGTGTCTCGCTTGCT10.53475935828877No Hit
GTCCCACTCCTAAACACATCCGTATTACTCGCATCAGGAGTATCAATCAC10.53475935828877No Hit
CAACACAGGCATGCTCAAAAAAAAAAAAAAAAAAAAAAATTAATATGCCT10.53475935828877No Hit
GGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAACCTCTGCCTCCTG10.53475935828877No Hit
GAATTCCTGGGTTAGCAATTAATCCAAGTTGACTGGGTTTACCATGAACT10.53475935828877No Hit
CCTTCCCACCCAGGGACTTCCTCCGCCGCACGACCATGTTGATGGCCCCC10.53475935828877No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGGTACC10.53475935828877No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAA10.53475935828877No Hit
CTAACGCGCTGTTTATTTGGGGGACTGGGGGGAAGCACCGTGCCGCTGCT10.53475935828877No Hit

[FAIL]Adapter Content

Adapter graph