FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT54.273504273504273No Hit
CAGCTTGACCGACTGCACGATCGCCGGAACCGTGATGAGGAAGATGATGA32.564102564102564No Hit
CTCTATTTGTACTTGGGAGCAGGGCTGTCCCGACATCAGGCGCAGCAGCT32.564102564102564No Hit
ATGCCAATGGGTCCATACCTCATTTTACACTGGCAAAGTGAAGAAAAGCA32.564102564102564No Hit
AATCCCAGCACTTTGGGAGGCCGAGGTGGGTGGATCTCGAGGTCAGGAGA21.7094017094017095No Hit
GGCTGTTACTTGCTTTGAGTTGGAAGCGGTTTGCATTTACGCCTGTAAAT21.7094017094017095No Hit
GGCTTAGGGTGAGAGAGTTCAAACCCCACGAGCAAAGGACTGGGGATTTC21.7094017094017095No Hit
CGCCCATGGCAAGGTGGCGGGAGAAGCCTGAGAGACTAGGGTGTCGACGA21.7094017094017095No Hit
GTTCGAATGGGGGATATTTCCTCATAACGGTCATGGCTGAGAGGCCAGGA21.7094017094017095No Hit
CGATGACTCCGCGCATGTTGTGGATCGGATGGGCTTGCGTTGCACGGGTC21.7094017094017095No Hit
CTTGATTGGTTGACCCATTTGTCATTATAAAATGCCCTGCTTTGTCTCCA21.7094017094017095No Hit
GCTAAATCCAGGAGACAGTTTCAGTCCTCTCTGCCTCTGAGCTGTTTCCT10.8547008547008548No Hit
ATCCTGGGCTTCATCCAATGGTGGGTGCTAACTCTTTAATAGCCTTCAGT10.8547008547008548No Hit
GATGAAATGCTATGATGTCTGGGATTTGCCTCAAAATAAACAGAGGGCAT10.8547008547008548No Hit
GATCGTTGACCACCTTGCCGCCGATTTCGAGCGCGCCGTCGGAGATGCTC10.8547008547008548No Hit
GGTCATGAGTTTTGATGTCTCCGTGATATTGCTCGCGATTGCTTCCGGTT10.8547008547008548No Hit
GTCCTCTGTGTCCAGCAGCGTCTTCTGGAGGTTCTGTAGGATTTCTTCAT10.8547008547008548No Hit
GAATATAGCAAACGGTCACGGTCAGGGTTGTACATAAAAAATCCAGGTTT10.8547008547008548No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTCGTCACTACCTCCCCGGGTCGG10.8547008547008548No Hit
CTCGTCCTGCAGGCGCTTCTGCTGCTCGGGCGTGGCGGTACGCCAGGCCG10.8547008547008548No Hit
GGTTAGGTCCACCTACATTTATGAACAGCAACAACCTGCTGTAGATGAAG10.8547008547008548No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTCTGTTCCTACGATCGCGGT10.8547008547008548No Hit
CTGTTTATATGCTGGATTACGTTTATTGATTTTCATAAGTTGGACCAGCC10.8547008547008548No Hit
TATCAACGCAGAGTACATGGGGCTGAGGCAGGCGGATCACAAGGTTAGGA10.8547008547008548No Hit
AGCCTGGCGACAGAGGGAGACTCCATCTCAAAAAAAAAAAAAAAAGATCC10.8547008547008548No Hit
GAATGGAATGGAGTGGAATGGAATGGACACGAATGGAATGGACTGGAGTG10.8547008547008548No Hit
CGTTTCCCCGGGACCTCTTGCCCCAATTCCTCCGCCTTGCCGGGAAAGGT10.8547008547008548No Hit
GAGGATGGCATCATGGAAGGAGGATGGCATCAAGGAAAATGCCATCAAAC10.8547008547008548No Hit
GTTCTGCATCGTGCTCCAGATCTTCCTCCGGCTCTTTGGTAAGGGAACAG10.8547008547008548No Hit
AGCGTCAGGTGAACGCTGCTCCAACCGTTGCATAACAACAAAGACGCCTT10.8547008547008548No Hit
GAGTAGGTTTGAAACACTCTTTTTGTAGTATCTGGAAGTGGACATTTGGA10.8547008547008548No Hit
ATATTTACGTGCTCGATTTCGACATATTTTTTGTTGCTGCAGTAATATCT10.8547008547008548No Hit
ACATTTCATTGTTTTGGTTATAGAGTGTATGTGGCCAGGTGTGGTGGCTC10.8547008547008548No Hit
GGTTCAAACACCTCTGACCATACTTTAACCTGATTCTGCAAAAAGCCCTC10.8547008547008548No Hit
GGTATCAACGCAGAGTACATGGGCCTGTTGGTACCAAAAAAGGGATAGAT10.8547008547008548No Hit
GCGCTGCTGTACCTGTGTGGTGGAGATGACTGAAGCCCGACACGGCCTGA10.8547008547008548No Hit
GCAGTTTGAATCGCGGTGCGACGAAGGAGTAGGTGGTGGGATCTCACCGT10.8547008547008548No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.8547008547008548Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGTAGAGTCTGTTGGAGAATTCAGTTTTTCATCACTGAAGCTGAAGCTGT10.8547008547008548No Hit
TTCCTAATATGCCTTTACTGATCCGTTTGCTGTGAACCCTATGTTATTTC10.8547008547008548No Hit
GGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT10.8547008547008548No Hit
CTCGTGCCTCAGCCTCCAAAGTAGCTGGGATTACAGGCACCCACCACCAC10.8547008547008548No Hit
GCCCAAGAGATCTCATTACAGTTCCCAATTCCTTTGTTGCTGTCTCTTAT10.8547008547008548No Hit
GTAGTCAGCTGCTTGCTGGTTTTACCTTCCATGTTTCAGCATGTGTTTGG10.8547008547008548No Hit
TCCTTAGGGTGTAAAGTTGGGTTATTAATTTGAGATTTCTTCTTTTTTTA10.8547008547008548No Hit
TTACGAACGCTGGCAATTGACATCACTACAGACAGCCTGGTTAGAGAACA10.8547008547008548No Hit
TTACAGGCGTGAGCCACCGCACCCAGCTGTGACTGCTGTTTTTCTACCTT10.8547008547008548No Hit
GTCAAACAGGGATAAAGCCATGCCTCAACTAACACACAGGATAATCAAGG10.8547008547008548No Hit
GTACTTGGGAAGCAGTGGTATCAACGCAGAGTACTTGGGAAGCAGTGGTA10.8547008547008548Clontech Universal Primer Mix Long (96% over 26bp)
GCTCCACGCTGTCATAATCCTCACGCATCCGCGCTCGGGACCCCTCTTCG10.8547008547008548No Hit
TTCCCCAAAGAGAGGAAGGAGAAGAGACAGGAGACAATGAAATGAAATGT10.8547008547008548No Hit
GTATCAACGCAGAGTACATGGGAGACTTCAGCTGCCTCAGAGGACCGTGG10.8547008547008548No Hit
CAGAAACACCCGTGCGTGTGCACTACACATTCAAGCAAAGCCATTCCTCT10.8547008547008548No Hit
CCATTGGTTCCAAGCGGTTTCTTTGTTTTCCTCCTCTGTTTCCATTTTCT10.8547008547008548No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTT10.8547008547008548No Hit
GGTCAATAGTACTTGCCGCAGTACTCTTAAAACTAGGCGGCTATGGTATA10.8547008547008548No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTACAGT10.8547008547008548No Hit
GTTCTGCATCGTGATCCAGATCTTCCTCCGGCTCTTTGGTAAGGGAACAG10.8547008547008548No Hit
GCTTATATTTACTTTCCCACTCCTTCGCCAGTGGCCCCTGGTTGTCAGTG10.8547008547008548No Hit
GCGCCAGCACGATCCCGCTCTCGGAGATCACCATCGCCAGCAGCGACGCC10.8547008547008548No Hit
ATAGAAAAACAATATAATAAATCAGTGAGACAAAGAGTTGGTTTGAAACA10.8547008547008548No Hit
AGATTGAGGTGGTGCCTTCTGCCTCTGCCCTGATCATCAAAGCCCTCAAG10.8547008547008548No Hit
GATCTCGGTGGTCGCCGTCCCATGTACTCTGCGTTGATACCTGTCTCTTA10.8547008547008548No Hit
GTGCTGCGAGGAGTGGGTCTGTGACGAGGATAGTATCAAGGACCCCATGG10.8547008547008548No Hit
CACTGCAACCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCTGCCTC10.8547008547008548No Hit
GGTGAGAGGCCTGATCACTGCAGCGGCTGCCACGAAACTTTCAGCCAGAG10.8547008547008548No Hit
GTACAGTGCATATTGGCGGCGCACGCCTCATTACGATTCGCCTGCTTGCT10.8547008547008548No Hit
GGTATCAACGCAGAGTACATGGGGGACCGGGCGGAGAGGGCTACCATGGG10.8547008547008548No Hit
CAGTTGTTGAAATGGAAACGTATAAAAAGCTTGAGCTTGCTGAAGGGAAT10.8547008547008548No Hit
GTTAAGTCCTGGTCTGCGTGGAGGTCGACGACTCCGTCGCAGACTACGGA10.8547008547008548No Hit
CACGTAGTAAAGGCGCATGGCGTCCTCGGCCCGCGCACTGTGTGACTGGA10.8547008547008548No Hit
CCCCAGGATATATTGTTTTGTACCATAATCAAGAGTATGCAAAGGGCATC10.8547008547008548No Hit
AAATAGCACCGCAGGTCTAAAGTCATCTCATCTCCTATTTTGCGGTTCTC10.8547008547008548No Hit
GGCCTGAGCTTCAGGGCAGCCAGCTCCCTCCCGGTCTCGCCTTCCCTCGC10.8547008547008548No Hit
GTTATATACGGCAACAGAAGATAATGCGATAGCTGCAACAGCTGTCTCTT10.8547008547008548No Hit
AAGCAAACCCGGAACAGCTGGATAATGTCCACCCCGAGCCGATTCAAGAA10.8547008547008548No Hit
AGATCATTGTTCCCTGAATTCCAGTTTAACAAATAAAATATTCCAATGTA10.8547008547008548No Hit
TTCCTGTCCTTGGTAAGTGCGCACCCTATGAAGGTTCAGTCTCCGTAATC10.8547008547008548No Hit
CTCAAATGGAACACGCCATGGAAACCATGATGTTTACATTTCACAAATTC10.8547008547008548No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTCTGTCTCTT10.8547008547008548Clontech Universal Primer Mix Long (96% over 26bp)
GGTAGAGTCTGTTGGAGAATTCAGTTTTACATCACTGAAGCTGAATCTGT10.8547008547008548No Hit
GAATATGATGATTTCGTAGAGTGTTTGCTTCGGCAGAAAACGATGAGACG10.8547008547008548No Hit
ATCTGCATGTGGTGTGTGCCCAGGCAGACTTCGAGGGGTTCGTGCTGTAA10.8547008547008548No Hit
GCATGGGGCTGAGAGAAGTGCTAAAGGAAGCAAGAACCAGATTTTCTGGG10.8547008547008548No Hit
GAGCGGGCCCTAATCTAATATGACCTGCCTAATTATAAAAAGGGGGAAAT10.8547008547008548No Hit
CCCTTGTCCAGCTTGATGGCCTTCTTGATCAGCACAGTCGCCGGAGGCGT10.8547008547008548No Hit
CTCTCGTTCCCAGCTTTCCCTCCGCAGTTTCTTCCACTGTTCTCTCTTGG10.8547008547008548No Hit
GATGAAGAAGACCTCCTGTTTGCCACGCTGGACCCGATGACCAGAAAAAT10.8547008547008548No Hit
CATCTGTCCATCTGCAAACATTTGGGTCAATCTTCACTTCCTTCCATTTT10.8547008547008548No Hit
ATGTCGGACAGCCCGTAGTCGTTCACGAACTCGACCTTCAGGTCGCGATA10.8547008547008548No Hit
AAATTTCACTCTTCTTGCCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCT10.8547008547008548No Hit
CTGTTTGAGCTGCTGCTGCTTCTTCTGGTGTTGTTGCGTTATCTGGCCTG10.8547008547008548No Hit
GCTACGAGCTGCCTGACGGCCAGGTCATCACCATTGGCAATGAGCGGTTC10.8547008547008548No Hit
CCACACATTTATCCCAACATAACTCCATGAAGTGATGCACCTGTGCAGTA10.8547008547008548No Hit
GGAGGAGGATGTGGCGCGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGG10.8547008547008548No Hit
CCTGTATTTTGCTGATCGGCTGTATGACTCCATGAAGGGCAAGGGGACGC10.8547008547008548No Hit
CTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGC10.8547008547008548No Hit
ATGTTAGATCATCTATGTAGTGGATCTGAGAGATCACGTGGACCAAAGCT10.8547008547008548No Hit
GATCTACACTTTTTTTTTCGTCGGCAGCGTCAGATGTGTCTGTCTCTTAT10.8547008547008548No Hit
GTGTCTACTTCCTAAAGTGCTGGGATTACAGGTGTAAGCCACTGCACCTG10.8547008547008548No Hit

[WARN]Adapter Content

Adapter graph