FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676497

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676497
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTGACCGACTGCACGATCGCCGGAACCGTGATGAGGAAGATGATGA32.9702970297029703No Hit
CTGTGATACATGTGGCGATCGATCTTCTTAGATTCACGGTATCTTCTGAG32.9702970297029703No Hit
TGCTTACGTGGCTTTCTCCCTGCACCTCTGTGTCTTTTAAAAAGAAAAAC32.9702970297029703No Hit
CTCCAAACAGTGACATCATTGTCATACTGATTTCGAAACTCGTGGCACCG32.9702970297029703No Hit
GTTATTACTTTGCATGTGTTTCATTTCCCCCAGTAAGATGTAAACTCTTG32.9702970297029703No Hit
GATATCCTCTTCGCGTACCACTTGTTTCAGTCGGCCATATTCCGCAAAGG21.9801980198019802No Hit
GCCTTCGTGGCAGCTGTAGACGCCGGGAAAAGGCATAAAGTCCGTTGGCC21.9801980198019802No Hit
GCTGAAGTCATTGGCAACAGCAATTGAAGTGAAGATGATTGACCGCACGC21.9801980198019802No Hit
ATAAAAAAGTCATGACCGTCCCTATCTTGCCAATCTGCCAGGACTCCAAG21.9801980198019802No Hit
CATTATTTTATGGGCATAGAATAGAAGCCATGGTAAAACAATAGGTTTCT21.9801980198019802No Hit
GCTGGTGAGTCTTAATTCAAGTTAAATACATTTATGAAGACAAAACTTTT21.9801980198019802No Hit
TTACTTTCCCTGGGGATGTGAGTTAACATACACATGTATATTTCTTTGTC21.9801980198019802No Hit
GGATCCTTCCATTGAGATGAATGTGGATTCGTCACCAGCACGCAGTGCAG10.9900990099009901No Hit
TTTCCCTGCAGGTCGGGGGATCCACCCCCCCTGAGTAACCCCTGGTAACG10.9900990099009901No Hit
GTCCCATCATTCAATATGAATCTATAGGAGGGGCTGGAGGCAGTGCCACG10.9900990099009901No Hit
CAGCACTCTGGGAGGCCAAAGCGGGTGGATGACCTGAGGTCAGGAGTTGG10.9900990099009901No Hit
GTACGTGACCGGATTTGTGCGTAATCCTGGTCTGTATGGCGGTGTGACGT10.9900990099009901No Hit
GGTCAGGGGAGACCTCCAGGCGCAGGGAAGGACGGCCAGGGTGACACGGA10.9900990099009901No Hit
GCTTCCATGGTCCAGAAGTGCAAGCTGTGTGCAAGAGAAAATTCCATCGA10.9900990099009901No Hit
TCAGGATTCCTTGGCCACAATGGTCTTGAAGATCACAGCTTCTTTGGGAC10.9900990099009901No Hit
AAAGGAGACAGGCAAGGCCAACGACCGGGCGGAGATCGCAGCTGTCTTCG10.9900990099009901No Hit
ATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACATCTTA10.9900990099009901No Hit
TCATGACACAGGAAGTTGAAGGTGGCACAGGCATTGGGCGTGTCCTGCAC10.9900990099009901No Hit
CACCAAAGCTATTTTTGTTAAACTGGATTGCAAAATCTGTCATGTGCTGC10.9900990099009901No Hit
CAAGGAAGCCAACAAATAAACAGAATGCTCCAAAGAAATAAAACAGTAAT10.9900990099009901No Hit
GGTGCCGCCCGTGAACTTGATGGCCTGGATGGCATCGGCGGGCAGTTCGG10.9900990099009901No Hit
GCTGGTAGAAATGTAAATTAATACCGCCATTATGGCAAACAGTATGAAGG10.9900990099009901No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACAATGCGTTTATAC10.9900990099009901No Hit
GAAAGCGGACTACGCAGGAACGGGGAGTTTGGGAGAAGCTCTCCTGGTGT10.9900990099009901No Hit
ATCTCTATCCGGGGCTCCAGCAACCAGAAGAGGGAAAAGCTGTCTTCGGT10.9900990099009901No Hit
CCCAGCAGGGCGGCCACGGCCCCCGTGGCATTGATGGTGATGGGCCGGCC10.9900990099009901No Hit
TTCCACTGTCATTCGCCATAGAAGCCGATACCGTGAAAGAAGAAAGAAAA10.9900990099009901No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTATAACACAGCT10.9900990099009901No Hit
AGCCATAGCTGTGGGGAAAGCTCCCAGCAGAATTTGGTAGTGAGCATTAG10.9900990099009901No Hit
CAATATAAGAGCTTCATATGAATGACATGACATTTTTACCCATTGGTGTT10.9900990099009901No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
GTTCTGTAGATCAGGCGCCTTTCTGACGGTGCCGTTCGTGTTGGTTGTAT10.9900990099009901No Hit
CCTCCTGAGGTGGCTGTCCCACCAGTTCAATGATGGTCACATGCCGCAAA10.9900990099009901No Hit
CTTCCTGTATTTTTCTCCTCTGTGGAACATGTGCCCCCAAAACCAGAAAT10.9900990099009901No Hit
GCACATAGTAGGTACTCTCTGAAAGGTGCTTTAGCATTATCATCATCTCC10.9900990099009901No Hit
GTCCACCACGGTCGTTACGGTCATTGCGACGACGCCGCTCGCCACCGCCG10.9900990099009901No Hit
GGAAGGGAAAGACCTGATCGTCCCCCAGCCCGACACCCATAAAGGGTCTG10.9900990099009901No Hit
CCTCGTTTACTTCGTTGCTCATCTTCATGCCTCTGTTCATTGCCTTCTGC10.9900990099009901No Hit
ATCACCTTCGGTTTAATCTCTTTTTAAAAGATCGCCTTCAAATTATTTTA10.9900990099009901No Hit
GGTGGATCACCTGAGGTTGAGAGTTCAAGACTAGCCTGACCAACATGGAG10.9900990099009901No Hit
TCTTGGCGCAAATAGCGCTGAATCGCTTCTTTAAAGGCTGCAGCGTCGTC10.9900990099009901No Hit
AGCGTCAGGTGAACGCTGCTCCAACCGTTGCATAACAACAAAGACGCCTT10.9900990099009901No Hit
GTACATGGGATAGGAATCACTCTTTCCCTACACGACGCTCTTCCGATCTC10.9900990099009901Illumina Single End Sequencing Primer (96% over 33bp)
TCACCTACTTGTCTCCTACACCTCCAAAGGCCAGGTGGACTTGCCCCTGC10.9900990099009901No Hit
CCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTA10.9900990099009901No Hit
CTCAAAATCAGTCCCGTATATTCGGAGAAGACAGAAATAATGGCAGAGAT10.9900990099009901No Hit
GATGTCTGCTGATGTCTGCTTATGTCTGCTTATGTCCGCTTATGTCTGCC10.9900990099009901No Hit
TCTATAGCAGCATAGGGTAAGCCTGACAAGAAGAACAAAGAGCTTTGGAG10.9900990099009901No Hit
CTCTTGGGTGCTTCCTTTGAGAAGAGACTGGAGGGATTCTTGGAGGGGGA10.9900990099009901No Hit
GTACATGGGGTGGCTGTGTCAGGGCTACTGCCATTGATTTTCTTTTTCCT10.9900990099009901No Hit
TATCAACGCAGAGTACATGGGCAGCAGTAGGATTGGTCAATAAGGACTCT10.9900990099009901No Hit
CCTGAACATGATTTTAGCAAAATTTCCATCGTGAGGCCATTTTCAATAGA10.9900990099009901No Hit
GCCTATTACTAGTTGCATGGGTTCTTCTTGCCACTGCTTCAAGTGGAGAA10.9900990099009901No Hit
ATGTCGGACCTCTCGCGCCATGACACCGATCCGGTCTGGCGGCTGGCGGG10.9900990099009901No Hit
ACCTTAGGCAAGTACCTTAACCTCTCTGAGCCTCAGTCTCCCTGCCCATA10.9900990099009901No Hit
CCCTTTCCAACATGGCGAAACCCCATTTCCACACACACACAAAAATACAA10.9900990099009901No Hit
GCAATCAGTACTGGTAGGCGTTAGACCCCGTGACTCGTGGCTGAACGGCC10.9900990099009901No Hit
GGCTTCCATGTCGTCAATTGCTGTAGAAATGCGATACTTTTTTCCTCCAG10.9900990099009901No Hit
GTAACACTCACCGCAAGGGTCCGCGGCTTCATTCTTGAAGTCAGCGAGGC10.9900990099009901No Hit
GAGCGAGACTCTGCCTCAAAAAAAATAAAAAAAATATTCTGGGGAACCAT10.9900990099009901No Hit
CAGCCGTGGTCAACGGAGGGAGTGGCACTTCTGCCTTGAGTCCCCAGGGG10.9900990099009901No Hit
CCAGTGACTGGATTAAGAGAAGAGGCTTGGGCCGGGTGCAGCAACTCACA10.9900990099009901No Hit
GTGCTGGGATTACAGGCATGAGCCACCGCACCCAGCCTGCATTCCTGTTT10.9900990099009901No Hit
AGGAAGCATTACATGCAGAGGAACAAAGGATAATGGCACATTCTTATAAA10.9900990099009901No Hit
GCGCTGGCGCGCTCCGCGTTGCTGGCGGCCGAGCGGGTGCTGATTCCCGT10.9900990099009901No Hit
GGCTCAGGCGCAGCAGCCGTTCGGCGAGGGCGGGTTCCACCGCCTTGCGG10.9900990099009901No Hit
ATAGCGTGCATCGCTATGGTAGAGATGGAAGGGTTGGCTAAAAGCGCCAA10.9900990099009901No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATTT10.9900990099009901No Hit
GGCCTGAACACCATGATCCCTTTGGAGAAGCCAGGCAGCGGCGGCTCCTC10.9900990099009901No Hit
CCCCGCGACGATGGCCGACGTGGCCGCGCGCGTCGGCGTGTCGAAGATGA10.9900990099009901No Hit
ACTACCTGCTGCCGGCGGACAAGTTCGCCGCGCTCAAGCGGGATCAGTCC10.9900990099009901No Hit
TGTCAGGTGGGGTGCAGCTGGGGAGAACCCGCGGTAGAGAATGGGAGGAG10.9900990099009901No Hit
TACTTGGTTCAGGAGCAAATACCAGCAGTTCACTGGAGACAACAGGTTCT10.9900990099009901No Hit
GATGAAGCCCACTTGATCATGGTGGATAAGCTTTTTGATGTGCTGCTGGA10.9900990099009901No Hit
GGGATTGCAATTATTCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT10.9900990099009901No Hit
GAGTAGCTGCCTCCTTACTTCACCTTCATGCACCAGTGCAGCGTGAACAG10.9900990099009901No Hit
GCGCAGACCATCGTCGAGATGAAAGCCGGCGCCTCGCCGATCTCGCCCAT10.9900990099009901No Hit
GTTATAACAACCAACTATATCTCTGGACATTACCAAATGTCCTCCTGGGG10.9900990099009901No Hit
GTGTCTACTTCCTAAAGTGCTGGGATTACAGGTGTAAGCCACTGCACCTG10.9900990099009901No Hit

[WARN]Adapter Content

Adapter graph