FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCTAGTGTCCTCCGCTGTGGCAAGAAGAAGGTCTGGTTAGACCCCAAT32.9702970297029703No Hit
ATCTTAGAATGTGACCTTATTTGGAAATTGGGTCACTGCAAATGCAATTA32.9702970297029703No Hit
AATTTAAGGAGTGGAAGACTTTAATGTTAGAGACCAAGACCAAAAAGAAA32.9702970297029703No Hit
TGGCTGAACCTTGTTTAACAGCTTCCATTGCATATTCAATTTGATGAATC32.9702970297029703No Hit
GAATAGGATGGCCTTTCATGGCGATTAGTACAGGTGGCGGCGGCGATGAC32.9702970297029703No Hit
CTGTTATGAACACAGCGGCTTACCAGACATTAAAAACGTCACCGGTATTT21.9801980198019802No Hit
GCCTTCAGGGAAAGGGTTTCATTCATACCTCAGCTCCTTCCTCAGTGCCT21.9801980198019802No Hit
TATATAGAGAGAGACTTTTAAAAGAAGTAGCATAAAATATGCATTTTATC21.9801980198019802No Hit
GTTTCCAGTTTCGTTTCCCCGGGACCTCTTGCCCCAATTCCTCCGCCTTG21.9801980198019802No Hit
GGCCTGGCCATGGCGCTGAGCGGGTCCACCGAGCCCTGCGCGCAGCTGTC21.9801980198019802No Hit
GATGAGTTTTTCTTCTATTTCTTGCTGTCGAATTTTTCGCTGCCGCTCGA21.9801980198019802No Hit
GTAATGATGGGTGGGTGACTTAACTTATAGCCTCCATGGCCTCGTCTGCA21.9801980198019802No Hit
GGGCTTGGGAAGCTGTAATAAAGTCCAGCATGCAGATTGTGAAGGTTTCG10.9900990099009901No Hit
TCTCTCTGCTGCAACGCGAGGCCGCTCAGGCAATGTACATCGACAGCTAC10.9900990099009901No Hit
GGTGGAAAAGATCTCTGCCATTATTTCTGTCTTCTCCGAATATACGGGAC10.9900990099009901No Hit
ACTTCACCCTGATCCAGGCGTTTTGCTGCGAGAACGACATCAACATCCTG10.9900990099009901No Hit
CTTGGTGTGCTTTGAGGAATTGACAGATTACCAGTTGGTCTCCCCCTCCA10.9900990099009901No Hit
GAGCATCCGAAACTTCCTTGGCTGTTGCTAGAATTACTATGACTGCTGCT10.9900990099009901No Hit
GCTCATAGCAGCCACCTTCATTCCCCAAGGGCTCGCTCAGCCAGATGCAA10.9900990099009901No Hit
TCCCCCGCGCGTGTAGGTGTTCCAGGGCGTGTCGGTCTGCAGGTCTTTCT10.9900990099009901No Hit
CTGCTCGACCGCATCGCCGCTGCCGCCGACCCCGAGGCCGAGGCCCGCGC10.9900990099009901No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGG10.9900990099009901No Hit
GTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTCCTG10.9900990099009901No Hit
CTGATGCAGATGACGTTTAAACACCAATGGGTAAAAATGTCATGTCATTC10.9900990099009901No Hit
GTGTATAAGAGTATTTTGTCAAAACTGTAAAGGAGGATGTGGCTATAGGG10.9900990099009901No Hit
CCCTAACTCATTTCATGAGGCCAGCATCATCCTCATACCAAAGCCGGGCA10.9900990099009901No Hit
CTCTCGCACTGTTGCCAGGGCTGGTGTGCAGTGGCTGGATCTCGCTTGCT10.9900990099009901No Hit
CCTCTGCACACCCTGCGCGCGAACATCGACTACGGCTTCTTCGAGTCCAA10.9900990099009901No Hit
GTCCAACCACAGTGCCAAGTCCTAACTTCTTGCCAGACTCTTTATGCACT10.9900990099009901No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTT10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
GGGCAGCGGGTGGCGGTGAGCTTCTATCGCAGCTTGGCGCAGCCGGAGTT10.9900990099009901No Hit
TCTATATGGAAATGAACTTCACCAATAAAGCTCTGCAGCACATGACAGAT10.9900990099009901No Hit
CCTCCTTCCCAAACATGCTGAGGTAGGCGGCCTTCATGTAAATGTAGGTG10.9900990099009901No Hit
ATACTTTGGTTACCTATGTACCTGTTACCACTTTCAAAAATCTACAGACA10.9900990099009901No Hit
GGCATGCGCCACCACCCTCAGCTAATTTAAAAATATATATTTTTTGTAGA10.9900990099009901No Hit
GTACTGGTCGCTGTTCGGGTTGATCGCCAGGGGCAGGGACTGATCCCGCT10.9900990099009901No Hit
GAAAAGTTACCACAGGGATAACTGGCTTGTGGCGGCCACGCGTTCATAGC10.9900990099009901No Hit
ATAGAAGGACAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTA10.9900990099009901No Hit
ATCTCAGGCCATAATGAAATGAGGCCTAAATGTTACTGTGGAAGCCTTTA10.9900990099009901No Hit
TTATTGATACAATGATTACAGATGCTTTCCTCAGAGCAGATGACTACATA10.9900990099009901No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGATAGGAATC10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
ACCGAGAGCAGGCCGCGGTCGGCCTCCTCGGCCGCTGCCTCGGGCGCGGC10.9900990099009901No Hit
AACTCCATGTTGGATTTGCGAAGCTGGCGGAGCTCTGCTTCCCGAGCTTT10.9900990099009901No Hit
CTCACGCACTACCGGCAGAGCGACGTCCGCCTCCAGCAGCGCCATGCGCA10.9900990099009901No Hit
GTCCTAAAAGGATGCCTGGAAACACTGCAGGATTTGTCAAACTCACCCAC10.9900990099009901No Hit
CAGTGGCTCACACCTGTAATCCGAGCACTTTGGGAAGCCGAGGCAGGAGG10.9900990099009901No Hit
GCCACCGGCACCGGCAACAGCGCCCGCTCACTGGTTTATGCGGATGGGAT10.9900990099009901No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTAGCTGGAAATGGAATTCTAGG10.9900990099009901No Hit
CACTGGGACTATAGGTGTGTGCCCCCAGACCGTCCTAATTTTTTTGTTTT10.9900990099009901No Hit
ACTTATTTGACCACAGAAGGTAGGTCCTTCCAATCCCAACAAACTTATAC10.9900990099009901No Hit
CTGCAGCCTCTGTCTCCCAGATTCAAGCTATTATTCTCCTGCCTCAGCCT10.9900990099009901No Hit
GATCGAGCGGGTGAACGCAAAGGTGCCCAGCGCCGCGCCCGCGGACAGCG10.9900990099009901No Hit
AGCAAATTCTTTCCCAGAATCTTTCTTTATACATTTTCTCACCACTGCAA10.9900990099009901No Hit
TGGCAGAACCGCAGGGTGAAGTCACAGCCAGCACCTGGTGGACAGCCCAC10.9900990099009901No Hit
GGACAAAGAGATCATAGCCGAGTATGAAAGTCAAGTCAAAGAAATTCGAG10.9900990099009901No Hit
GAAGGCCCACTGCACGGGCGGGTGCTTGTGAAATTCCTCCAGGGCCACCT10.9900990099009901No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC10.9900990099009901Clontech Universal Primer Mix Long (96% over 26bp)
GTTTTCACTTCTGCAAATGCTACCCTGGTCCAAGCCACCATCATCTCTCA10.9900990099009901No Hit
GGCCGAAACACCTGCGCCTCGCGGATCAGCGCCACCATCTCGGCACTGGC10.9900990099009901No Hit
GTTTGCACACCTTGGGGCAATTACATGCATGATCTACATACATACTTCTC10.9900990099009901No Hit
ACCCAACTGCTGACTGCAAAACAGCCGTCAATTGTTCATCTGATTTTGAT10.9900990099009901No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACA10.9900990099009901No Hit
GCATTGTAAGGCTTGATGGTGCTGCTTAAAATCTCGATGGAATTTTCTCT10.9900990099009901No Hit
AAGTAAAAGAAGCGGATTTAATTCTGCATTTAATTGATTCTTCAAATGAG10.9900990099009901No Hit
GTACACCGTGGCGCGCTCCAGCCCCGTGGCGCGGCACAGGTCAGCGACGC10.9900990099009901No Hit
GTTACCGCGCTTGACCACAATATCAACGTAACTTCCGCGCTCTGGATCAA10.9900990099009901No Hit
TTATTACTCCTTTTTTTCCTAATTTTTTAAACAGAAGAAATACTTGTATT10.9900990099009901No Hit
GTGCACTTCTCCATCGGCCTTCAGCCTTCTGGGCTTGACTGCAAATGGAC10.9900990099009901No Hit
CCTGTGGGCCAGTCATAGTGGTGGGGCAACTGAAGTGACTTGGGTCTTGA10.9900990099009901No Hit
GTCTAATTATGTGGAAATTCTCCAATTAGTTAGAGAAGTAACTTGGTGCT10.9900990099009901No Hit
TCATGCTTCTACTTAAAACCGTCAAATAGCTTCTGATTGCACTTAAAACC10.9900990099009901No Hit
CATATAAATATCTCAATGCTTTACAAAGCAGTATTGCTGCCCGCATGTCC10.9900990099009901No Hit
CCTGCAGCCCGCGCGCCTCCACGGCGGCGGTGATGCCCTGCGCGGTCTCC10.9900990099009901No Hit
GTGTATATATGCCACATTTTCTTTGCCCATTCATCTGTAAACATTTAGGT10.9900990099009901No Hit
ACCTAGCTCAGTGTTAGGTTATTGTTTGCTTGGTTTCATTCATCTTTGGT10.9900990099009901No Hit
GTGGAACGTGGGATCCCACCAGGACATCACCGAAGACAGCTTTTCCCTCT10.9900990099009901No Hit
CTTAAAACTTCTATCTTCTCCAAATAGTTTCATCCTAACACTCCCAATTA10.9900990099009901No Hit
GAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAATTAC10.9900990099009901Clontech SMARTer II A Oligonucleotide (95% over 21bp)
AAATAGCGTATGTTGCTAATTTCTCCCTTTGACTCCTGACCCGAAGAAAA10.9900990099009901No Hit
GTCCCAGAACGACAGCGGCAGTGAGAATGCGACGACTCGCAGTGCTGTCT10.9900990099009901No Hit
CTTTTACTTCCTCAAGCGTTGAGCGGAATGCAGCAATCAATGTCGTCGGA10.9900990099009901No Hit
CAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCC10.9900990099009901No Hit
CCGTTACCAGGGGTTACTCAGGGGGGGTGGATCCCCCGACCTGCAGGGAA10.9900990099009901No Hit
GTCCGAGGTGCGCCGCATCATCGATGCCACCGAGCCCTCCATCGTGCTGT10.9900990099009901No Hit

[WARN]Adapter Content

Adapter graph