FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2052
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA110.5360623781676412No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC80.3898635477582846No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG80.3898635477582846No Hit
GATCCCAACTGCTCCTGCGCCGCCGGTGACTCCTGCACCTGCGCCGGCTC60.29239766081871343No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA50.24366471734892786No Hit
GCCCACAGGGCAGCAGGAGCAGCAGCTTTTCTTGCAGGAGGTGCATTTGC50.24366471734892786No Hit
GCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACT50.24366471734892786No Hit
GGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTACATCT50.24366471734892786No Hit
CTGTCATCTTCTCACCCAGTGTGACAAGAACATGCCGGATTTCAGCACCC40.1949317738791423No Hit
GGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGC40.1949317738791423No Hit
GTATTTCATGTTTGATGCGTTTGGTTCCAGATACTTTTGTTTTGTTCTCA40.1949317738791423No Hit
ATTTCATAGAAAAAGGAATATAGCAAACGGTCAGGGTCAGGGTTGTACAT40.1949317738791423No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGA40.1949317738791423No Hit
GGTCCCTGCCCAGGCATCTACTCGCCCGCCTTTGCCTCTGAGTCCTCCCC40.1949317738791423No Hit
GTTAAGGGAAAGCGCCGAGATGACGGGCTTTCTGCTGCCGCCCGCAAGCA40.1949317738791423No Hit
TATCAACGCAGAGTACATGGGAACACGTGGGGGCGGTGCCGGTCGGAGGG40.1949317738791423No Hit
CCTGTGAAGAGTGCCTGAAGAACGTCTCCTGTCTTTGGTGCAACACTAAC40.1949317738791423No Hit
AAATAAAGCTCCTGGGCAAGGGGACGTCTGCAGCTGATGCCGTGGAGGTC30.14619883040935672No Hit
TACCTGGACTCAGCGGTAGCAACCTCGCCCCTTGCAACAAAGGCAGACTG30.14619883040935672No Hit
TCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCTAG30.14619883040935672No Hit
CTGTAAAAGCTGATCATGTACTTCTTTCTCCAAAACAACTTTCTCTGCTT30.14619883040935672No Hit
GTACATGGGACTGGCTGCTCTGAAAAGCCATCTTTGCATTGTTCCTCATC30.14619883040935672No Hit
GCACTTGTCCGACGCCCCTTTGCAGATGCAGCCCTGGGCACACTTGGCAC30.14619883040935672No Hit
GTCCAGGCTGGTCTCGAACTCTTGACCTCAGGTGATCCACCCACCTCGGC30.14619883040935672No Hit
ACGCAGAGTACATGGGATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTA30.14619883040935672No Hit
GCCTCTTGCGCTCCTAGGGGCGGAGAAGGGTGCGGGCTCTTCGCCCTTTG30.14619883040935672No Hit
GGCTTCTGCTGAGGGGGCAGGCGGAGCTTGAGGAAACCGCAGATAAGTTT30.14619883040935672No Hit
GCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCC30.14619883040935672No Hit
GGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGG30.14619883040935672No Hit
TTCAGAAAGAGACTCAGAAGCGGCGAAGCAAAACCACGTCACTGCCGACG30.14619883040935672No Hit
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT30.14619883040935672No Hit
GAGTACAAGCCTTAAGAACAGAAAATTTCTTTTACTCCGTACGCCAGAGG30.14619883040935672No Hit
GCAATGGTGATCTTCTTGCTGGTCTTGCCATTCCTGGACCCAAAGCGCTC30.14619883040935672No Hit
CATCCCCCCCGCGAAGGGGGTCAGCGCCCGTCGGCATGTATCTGTCTCTT30.14619883040935672No Hit
CTGCAAAGGGGCGTCGGACAAGTGCAGCTGCTGCGCCTGATGCTGGGACA30.14619883040935672No Hit
GTAAGCAGCTGAGACTCCTATGCTGCAGCCCCGTCCCTAAGAGATGGCTA30.14619883040935672No Hit
GTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTT30.14619883040935672No Hit
GGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG30.14619883040935672No Hit
GCCATGAATTCCTTGCCTGATATTGAAGAAGTCAAGGATAAAAGCATAAA30.14619883040935672No Hit
CATGGGAGCAGCAACGCGGAGGAAACGGGAGTGAACGGAGAGCGTAGTGA30.14619883040935672No Hit
CTCCCTGCCCCCAGAGGCAGGACACAGCCAGCCCTCCTGTGACAGCACTC30.14619883040935672No Hit
GGCCCCTACATTGCAGATGAGGCTCCCAATGTTGACGTTGGCCAGGGCCT30.14619883040935672No Hit
GCAGGGAAGCCTCCTCTTCGTACCTCGTTTTTTGGCTCGTGGGGGGTCCT30.14619883040935672No Hit
TTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGG30.14619883040935672No Hit
CTATTGTATTTGCCAGAGCACATCTGATTGAGTGGGGAGCTTGTGCACTT30.14619883040935672No Hit
CTTTTATTTAGGTGTCGGGACTGCTCTGCCACAGCTGCCCACCTGGGGCG30.14619883040935672No Hit
GTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCT30.14619883040935672No Hit
CACTTGGCACAGCCCACAGGGCAGCAGGAGCAGCAGCTTTTCTTGCAGGA30.14619883040935672No Hit
GATCTGATAAATGCACGCATCCCCCCCGCGAAGGGGGTCAGCGCCCGTCG30.14619883040935672No Hit
GTCTACGGCTGCGTCTGACATGGTGGGGCGCGCCGGTGATCCGATGCAGG30.14619883040935672No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.14619883040935672No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA30.14619883040935672No Hit
GTTTTTTCACTATATTACAAGCTACATGGTGCAGGTTGGCATCTCTGTGA30.14619883040935672No Hit
GATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGG30.14619883040935672No Hit
GTATCATCTCCTCATTGCTTAAATTTCTGCCATGTATGTCCCCTCTAAAT30.14619883040935672No Hit
GGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTT30.14619883040935672No Hit
GTACTGGAGGTTGCGCCTCGGTGGCGCCGCGCTGCTCCTGCTGCTCATCC30.14619883040935672No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)