FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2088
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTGCACCTGCGCCGGCTCCTGCAAATGCAAAGAGTGCAAATGCACCT80.38314176245210724No Hit
CTTTACATCTGGGAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCAC80.38314176245210724No Hit
GGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTTA70.33524904214559387No Hit
TGCAAAGAGTGCAAATGCACCTCCTGCAAGAAAAGCTGCTGCTCCTGCTG60.28735632183908044No Hit
GGGCACACTTGGCACAGCCCACAGGGCAGCAGGAGCAGCAGCTTTTCTTG50.23946360153256704No Hit
CTCCAAGTCCCAGCGAACCCGCGTGCAACCTGTCCCGACTCTAGCCGCCT50.23946360153256704No Hit
GTCATCATAGTAACTGGAGTCGTGGCCGGATCCTGAGAGTTCAGTCACTT50.23946360153256704No Hit
ATGCAGCCCTGGGCACACTTGGCACAGCCCACAGGGCAGCAGGAGCAGCA50.23946360153256704No Hit
GTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGA50.23946360153256704No Hit
GTCCCGACTCTAGCCGCCTCTTCAGCTCGCCATGGATCCCAACTGCTCCT50.23946360153256704No Hit
TTACATCTGGGAGCGGGGCTGTCCCAGCGAACCCGCGTGCAACCTGTCCC50.23946360153256704No Hit
GGGTCAGGGTTGTACATAAAAAATCCAGGTTTGTGGAAGTCGCGTTCTTT50.23946360153256704No Hit
GAGTGCAAATGCACCTCCTGCAAGAAAAGCTGCTGCTCCTGCTGCCCTGT40.19157088122605362No Hit
GAGCGGGGCTGTCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCC40.19157088122605362No Hit
TCTCTGCTCTCCGTTCCTCCTGCCGTATCCGCCTCTCCTCCCGCTCACGC40.19157088122605362No Hit
GTACATGGGACCACGCCTCCTCCAAGTCCCAGCGAACCCGCGTGCAACCT40.19157088122605362No Hit
GATAAGAGGCTGCACAGCGACATGCAACAGTCTTTTCACTGCAGCTGAAT40.19157088122605362No Hit
GCAGCTGCACTTGTCCGACGCCCCTTTGCAGATGCAGCCCTGGGCACACT40.19157088122605362No Hit
GGCATGGAGTGCGTGAAGAGCCGCAAGAGGCGGAAGGGTAAAGCCGGGGC40.19157088122605362No Hit
CACTTGGCACAGCCCACAGGGCAGCAGGAGCAGCAGCTTTTCTTGCAGGA40.19157088122605362No Hit
TCCTGAATCTTCTTTCTAGTGGTAGAATAAGGTACATATTGTTCTGGGGT40.19157088122605362No Hit
GTGTTCCTATCCCTAGATCCGGATCCGGGGGATGCGGACGATATCCTCAC30.14367816091954022No Hit
TCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCG30.14367816091954022No Hit
CCGCACACGGATTCGGTATGGCACATTCCTTATTCCTTTGGCCCAGACAG30.14367816091954022No Hit
GCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGATACAGC30.14367816091954022No Hit
ACACTGGGCTGGGCGCGGTGCTCACACCTGTAATCCCTGCACTTTGAGAG30.14367816091954022No Hit
AGATTTGGATGATGTTGAAGAAGTAGAAGAAGAGGAAACTGGTGAAGAAA30.14367816091954022No Hit
CGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGC30.14367816091954022No Hit
TTCCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCC30.14367816091954022No Hit
GAATATAGCAAACGGTCAGGGTCAGGGTTGTACATAAAAAATCCAGGTTT30.14367816091954022No Hit
CACCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTT30.14367816091954022No Hit
ATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTAT30.14367816091954022No Hit
TATAATAACGTTCATGAAATCGTTACGTTGACAGGTAGGGTTAATATGAA30.14367816091954022No Hit
TGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCC30.14367816091954022No Hit
AGGCAGAGATTGCAGTGAGCCAAGATTGCACCACTGCACTCCAGCCTGGG30.14367816091954022No Hit
TCGCCAGAGTCCCTGAACTCTCGCTTTCTTTTTAATCCCCTGCATCGGAT30.14367816091954022No Hit
CCCTGATGCAGTGCACAGCCTGGCTGAATGCCTATTTCCACCAGCCCGAG30.14367816091954022No Hit
GGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGG30.14367816091954022No Hit
GTGCAAATGCACCTCCTGCAAGAAAAGCTGCTGCTCCTGCTGCCCTGTGG30.14367816091954022No Hit
ACTCATAACCCCAGCACTTAGATATTTTAAAGAGGCATCTATCACATAAG30.14367816091954022No Hit
CGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTC30.14367816091954022No Hit
GTTCTTTACCAGGATGCCTAGTACCTTTTGCTGGACATGTCTGGAAACTG30.14367816091954022No Hit
CTTTTAATACTTTGGGGTGAGCCCCACAGGAATAAAAAACACTGGGAAGG30.14367816091954022No Hit
CTCCACACACCTTTCATCTCTACTTCCTTTTTTAGCTCAACAGGAAGCTG30.14367816091954022No Hit
AGACAGAGTCTTCCTCTGTCTTCAGGCTGGAGTGCAATGGCGCGATCTCG30.14367816091954022No Hit
GTCTCGCTCTCTCGTCCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCA30.14367816091954022No Hit
GAAATAAATCCCCCCTCCCCTGCCAGGTGAAAGGAAATATTGCACTTTCT30.14367816091954022No Hit
AAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCG30.14367816091954022No Hit
TATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCGGA30.14367816091954022No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG30.14367816091954022No Hit
CATGAAGTCCACTGTGGAGATATTTAAATTTGAGGAACAACAACGTTCTC30.14367816091954022No Hit
GGGATATCCACGTGCCCTCATCAAAATCCCCGTTTCTTAGAAGCTCCCTC30.14367816091954022No Hit
GACAGTGGCCAAGAACAAGGACCAGGGCACCTATGAGGATTATGTCGAAG30.14367816091954022No Hit
TCTCCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGG30.14367816091954022No Hit
ATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCT30.14367816091954022No Hit
GTCGGTAGTCGGGGGAACCCTCCTCCTGGGCATTGCCATCTGCTGCTGCT30.14367816091954022No Hit
GTGCTAAGCCCCTCGCTGCCTGGGGCCAGTGGCGCTGGCTGGCCACTCGG30.14367816091954022No Hit
GCTTTAGAATCCACCAATTTAAAAATGCCTTTCTCTCGCTGGGTCCACTT30.14367816091954022No Hit
GAGGATGACCGGTGCCTTGCTTTCCATGACATTTCCCCTCAAGCACCAAC30.14367816091954022No Hit
CTCTAGGACGGGGCTGCAGCATAGGAGTCTCAGCTGCTTACATCCAGGTC30.14367816091954022No Hit
TTGATAACCTGTCCATCTCTAGTTTCAACCGTCTTAATCAGAAGTGTCCT30.14367816091954022No Hit
GTTGGAGACTGAGCGCTGTGATGTCCCGAGCCATGGGGACCGAGGCCCGG30.14367816091954022No Hit
GCATCAACCTGCGCCGTCTTGTTAACTTGTCATATCGCGCACGTAGTAGC30.14367816091954022No Hit
TTTCACATGTTGTCAGCTTTAACCTTCTACAGACACAGGCCCTCTCCTCT30.14367816091954022No Hit
AACGCAGAGTACATGGGGACCACCACGCCTCCTCCAAGTCCCAGCGAACC30.14367816091954022No Hit
GGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT30.14367816091954022No Hit
GAACATTGGGGATTCCTTTAGTGAAGACGTGCGGATAGGCGCGCTGCTCG30.14367816091954022No Hit
CCTCGGAAAGGCGGACAGGAAGGCGTGTGCAAGGCGGGGTCCGGCCCGCG30.14367816091954022No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)