FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGGGGGTGATCACTCTCCGTCCAGGATGGCGGGGACCTTGAACTGGC32.941176470588235No Hit
GAATGTGGCCTATGAAGACAGAGGCATCAATAACCTTCTGACTCTGAGCC32.941176470588235No Hit
GACCATCTCGGCCGGCGGCGGCTGGCTCGTGAAGACCATCGGCGACGAGG32.941176470588235No Hit
GTGTAGAGGAGAGCCCGATGCTCGATCTGAAGATCACCGGCGGCACGGTC32.941176470588235No Hit
AATGGCTGCCAGGCTCCACCATCTGGGCAGGTAAGCGCTTCTACCAACGT21.9607843137254901No Hit
GGGTTGATTCCATTCCATTGCATTCCATTCCATTCCATTCCATTCCATTC21.9607843137254901No Hit
GTGGGAAGCAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAG21.9607843137254901No Hit
CAATAGGTGGAACTGGAGGCCATTATCCTAAGTAAAATAATTGAAACAGA21.9607843137254901No Hit
CTCTAAACCTGTCTTCTTGGGCCTTTTATGGAGACCTCATTGGATAGGGA21.9607843137254901No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG21.9607843137254901Clontech Universal Primer Mix Long (96% over 26bp)
GAGCAAACAGGCTTAGATACCCTGGTAGTCCACCCCGTAAACGTTGGGAA21.9607843137254901No Hit
CGGCTCAAGTCCGACCTGTTCGAGGTCTTCTGGCACGCCACCGACGGCAC21.9607843137254901No Hit
AGATAGAACTCGGGCTTGTAGAAAAGGCAATAGCCCAGCCGCCCGCCGAC21.9607843137254901No Hit
CATTTCAGTGGACCAGCTATATGCCTTGGTTTGGACCATAGGAGGCTTTG21.9607843137254901No Hit
ATTCCATTCTATTCCAATCCATTCCATTCCATTCCATTCCATTCTATTCC21.9607843137254901No Hit
GGGTAAAACGTTTTTATCCTTCTGTACTTTAAGTATGTCATGCCACTCTC21.9607843137254901No Hit
GCTGTGGAGGCAGCTACCTGCTTGGCTGATGAGATGAGCTTCTCCTGGCT21.9607843137254901No Hit
GGCCATCTGATTACTCCCCTGATCCTTGCTTAAAAGAGACTGAGGGCCGG21.9607843137254901No Hit
TATTACATCTTTTTGCTTTTTATTTTGTTTTGTTTTTTGAGACAGAGTGT10.9803921568627451No Hit
CAGTAAATTCTTTGTGTTGTGTGCATTCAACTCACAGAGTGGAACGTCCC10.9803921568627451No Hit
ATTATAAGCATCCTCTCTGCCCCCATTCAGAGGAGATGAACTTTGCATTG10.9803921568627451No Hit
GCCTGAGCCTGATCGGCGCGGTGGTGGCCGAATTCACGGCCGGCACGGCG10.9803921568627451No Hit
CAATTCCTGAAAAGGTAAGACCCCAAGATTTATTTATTTTCATTAGAACA10.9803921568627451No Hit
TGTCCAGGCTGGAGGACAGTAGCTATTCACGAGTACCATCATGTCATACT10.9803921568627451No Hit
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT10.9803921568627451Clontech Universal Primer Mix Long (96% over 26bp)
GCACACGTCTGCCCATGTACTTGCGTTGATACCACTGCTGTCTCTTATAC10.9803921568627451No Hit
CCATTCCATTGCATCAGGTTGATTGCATTCCATTCCATTCCATTCCATTC10.9803921568627451No Hit
CTTATCTTCTCTATGCCTCAGTTTATTTACCTTAAAATAAGATTCCTGTC10.9803921568627451No Hit
CTCCAACCCAGCTGCTTATGTACCTAGGCACTCTGCCTTCCCTCCTGTTA10.9803921568627451No Hit
GTACTTGTAGATGACCTCGCTGCCCGAAGAATCGTGGGCGGCCGAGGCGC10.9803921568627451No Hit
CTCCTTAATTGGCATTCTTTTTAATTTAGAAAGTGAAAATTCTCTGCTTT10.9803921568627451No Hit
CCCGATCAACGTGCGCTACCCGCGCGAGATTCGCGACTCGCTGGAGCAAC10.9803921568627451No Hit
ATCTTCACGATTTCCTAAAGTACCTGGCAAAGAATTCTGCAACTTTGTTC10.9803921568627451No Hit
GTGCTGGGCTTCGAGGTGCACGTGGAGCTGAACACCGCCACGAAGATCTT10.9803921568627451No Hit
GTCCTGGTAGGTGGCCGATTCGTGGCCCTTGATGAGCGTGGTGCGGGTGC10.9803921568627451No Hit
GATTATTCCATTCGAGTCCATTCGATGATTCCGTTCGATTCCATTCGATG10.9803921568627451No Hit
AGATTCTATATCTTCCTTTTGTTAGGAGTTTTAATGTATGAGAGGTAAAT10.9803921568627451No Hit
ATCTGCTTGTATACTGTAAGCAGCAAGCTGATGATAACCAACGGACTCAA10.9803921568627451No Hit
TCCATTCACTTCCTGCAGGACATTTTGGTTGCTTCCAGATTTTGGCAATT10.9803921568627451No Hit
TCATACAATTTAGACCCAGATTGTACTTTTCTTGTGGGAAATGGGAATAC10.9803921568627451No Hit
GGGTAGGACACGCGCTTGTTCAGCAGCAGATTGCTGTCTCTTATACACAT10.9803921568627451No Hit
CCTCCTTTGGGAACAGCTCCTCCTAATACACTGTCCACAGCAGCTGCCCT10.9803921568627451No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCCTGTCTCTTATACAC10.9803921568627451No Hit
CCTTACACCAGCATTCCCTGTTCCACTAGTACTCCTTGCACACAAGCTCT10.9803921568627451No Hit
AAATATGGCTGCAACCCAGCCTATGTCCAAAGCTCAAGAATAATTTGGGT10.9803921568627451No Hit
GCAAATGAAAAACCAAACAGTGCCCTTGATGCCCGGCAGCGTTTGGCAGA10.9803921568627451No Hit
CAGTAAGGCCTTGCTGGAGGAAAAAGCTGAAACTGTATCATCCTCATTGT10.9803921568627451No Hit
CGTACCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTC10.9803921568627451No Hit
CCCATTCAATCCGACGTTGCTCGACGGCGTCGTTGCGGATTGATTCGCAC10.9803921568627451No Hit
CACACACACACACACACACACACACACACACTCACACACAAACCACCCTC10.9803921568627451No Hit
GTCTGGCACAGCTCTGTTCTGAAACCATAGATGCTACAGTTGCTGTCTCT10.9803921568627451No Hit
GTATACATATGGCTCAAATATTTTATAAAACACACTTATACTAAAAAAAG10.9803921568627451No Hit
TTTCCAGACAGCCTTTTGAACAAAAATAAACCGTTTCGCCGCCGCGCTCC10.9803921568627451No Hit
CTTTTTGTAGTATCTGGAAGTGGACATTTGGAGTGCTTCTGTCTAGATTT10.9803921568627451No Hit
GGACCTCACTGCTAGGGATTGGCCAGGATGGTGAGGTTATCAGGTGCATT10.9803921568627451No Hit
GCCATATATGCCATATGGCATGATCCAGATATTAGCTACATGACCATCTT10.9803921568627451No Hit
GTATAAGAACTCAGTGTCTTGTGACTCCAAGGCCTTGACACTGTTGTGAG10.9803921568627451No Hit
CCCATGGCAGGGTTTTAGAAGCTCCCTGGCACAAGCTTTCAGAGGACAAG10.9803921568627451No Hit
TTCGGCGCCCAGGCTGAAGCTCTCCTTCAGATCGGGCGGTGTCTCGGTGC10.9803921568627451No Hit
TGCAATCCTTGAACGCCTGCACCTGTGGCTGGCATTGCCGCCAGTCCTGG10.9803921568627451No Hit
TGATCTAACAGGCAAACAAATCAGCAAATCAGCATAGAGGCAGAAATTGA10.9803921568627451No Hit
GACTACCGCCCCGGCGAAGATCCGTTCTTCCACCTTGTCCGAGCCGAAGG10.9803921568627451No Hit
GTGCTGGATAGAGCGATATGAAAACAAACAAATAAGCAAAACAAAACAAT10.9803921568627451No Hit
GTGACAGAGGTACCCATGTGTCCTTAAAAAATTCTTTTGTGGGTATAGAT10.9803921568627451No Hit
GCATTTGCATATCCTCATTGGTAGACAATGCACTCATCATGTGAGAAGTC10.9803921568627451No Hit
GAGGCATTCTGGTTTTTGGAATTTTCAGCCTTTCTGTGCTGCTTTTACCT10.9803921568627451No Hit
GGCTTTACAAACAGAGTGTTTCCAAACTGCTCTACGAAAAGAAAGGTTAA10.9803921568627451No Hit
GGCCATCTGATTACTCCCCTGATCCTTGCTTAAAATAGACTGAGGGCCGG10.9803921568627451No Hit
GGTCAGGTCTGTCTGGTTTCAGTGGGTTGTAAAGTTTGAATGTGGCTCCA10.9803921568627451No Hit
GTTCAGGACACCAGCTTATTTTCAATTTTGACTGCTATTTCTGTTTTCCA10.9803921568627451No Hit
GATGGCGGGAGCGCGCCTCGCACGCCGCTTCGGCGGCAAGCCGCCCATCG10.9803921568627451No Hit
AACCTGTCCCTCCCCCAATTTGACCCACGAAAGAAATTACCGCTTTTGTC10.9803921568627451No Hit
ATGTCGACCCGCGATGGCACGGTGCACCCCAGTTTCGGGCATAGCGTCTG10.9803921568627451No Hit
GCCATGAACAGTCAGCAGCCCGGATCTGGAGCTAATCCTGTGTGTCTTCC10.9803921568627451No Hit
GTCCCGGGCCTGCTCGTGGTCGCCAAGGCCGCCGCGCGCGCCGGCGCGGA10.9803921568627451No Hit
GAAACATTCTGAGAATGCTTCTGTCTAGGTTTGATGTGAAGATATACCCG10.9803921568627451No Hit
CTACTTGGCGGAGGAGTCCCAGGAGGTCATCGACGAGATCGAGGCCGGCA10.9803921568627451No Hit
GCTGAATTCAAGGAAGCCTTCTCCCTATTTGATAAAGATGGCGATGGCAC10.9803921568627451No Hit
CGAAGATATGGCGATCAAATGGGAGCAGCTGGGCCAATCAGCCTTCGATG10.9803921568627451No Hit
GCAACCTCCACCTCCCAGGTTCACATGATTCTCATGCCTCGGCCTCCCGA10.9803921568627451No Hit

[OK]Adapter Content

Adapter graph