FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003676513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003676513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCTGAGGCTGAAGGCCGGCTTCACGCTGCCCCAGTTCAGCGAGCGCAC47.2727272727272725No Hit
GTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGG35.454545454545454No Hit
TTCGTGGCCTCGCTATGATGACCGCAGCTTTCGAACGCTGCCCGACCGAA35.454545454545454No Hit
CCCCAGGAAAGAGCTCTGGCCACTTATGCGGGCCACTGCAAGCTGCTCTG23.6363636363636362No Hit
GTGAATTTGATCCTGTCGTTATGATGTTAGCTGGTTATTTCGCCCGTTAG23.6363636363636362No Hit
GACGAAGGGCTTGCGCGTGACGGGCTGCCCGCTGGGCGAACGCCGCACTT11.8181818181818181No Hit
CATTTTCTGGAATCTGCAAGAATATATTTGCCTAGCCTTGAGGATTTCGT11.8181818181818181No Hit
CCCCGTCGGCACCCTCGTCGGCCTCGACTGGGACGCTTCGATGCTCGCCC11.8181818181818181No Hit
GGTACTTGCGCTTACTTTGTAGCCTTCATCAGGGTTTGCTGAAGATGGCG11.8181818181818181No Hit
TTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCC11.8181818181818181No Hit
CTTGTGATGCCGGGGCTTGTTTTATGTGCTGTTTGCATGCATTAGGTCAA11.8181818181818181No Hit
GTTCATTTGTACCACAACTTAGAATTGGGGTTGGGCAACTTACAGCATAA11.8181818181818181No Hit
TTCCATTACTGCCCAAACTCTTCAAGTTTTAGAAAAGCATAAAGCTGATG11.8181818181818181No Hit
CTCGAGCTCAACTGAGCGACGGGCCTCCCCTATGAAGATGGAGATCCTGG11.8181818181818181No Hit
GACGATCAGCATCGAAGGCGAGGTCGCGAGGCCGCACAGCAGGGACGTCA11.8181818181818181No Hit
AAGATGAAGAGATGATCCGTGAGGGAATCAGTGACTATTTGACGGATTGT11.8181818181818181No Hit
CGGGTTGATTCCAATGTATTCCTTTCCTTTCCATTCCATTCCATTGCAAT11.8181818181818181No Hit
GTCCCCTCCATTCAGAACAGCACGAGAGGCCCTTGTCATCAGGCCTGTCT11.8181818181818181No Hit
CCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCCTTCTGATCGAGGC11.8181818181818181No Hit
GCTTCAACCGCGGCATTCAGCGCGAGGATATTAGTCTGGAAGGCAATACC11.8181818181818181No Hit
CATCCCTTCTCAGCCCACTACAGTTGTAGTTCTGGCACCATCGTGCCATC11.8181818181818181No Hit
GAATCACTCGGTTCCAGGTTTTACGCTGGCGAAGACTGCCGATCCGATTT11.8181818181818181No Hit
GCAAGGTGGTGTCCTTCGCGGTCAAGGCCGGCGACAAGGTCAGCCGCGGC11.8181818181818181No Hit
ATTTAGGACCAACCAGAGAAACCCAATGTTTGGCTAAACAATCCCACAGG11.8181818181818181No Hit
CCATTGGACTCCTTTCCATTCGAGTGCATTCCATCCCGTTCCATTTCTTT11.8181818181818181No Hit
TTGCAAATGGCACTTGGGTTCCAGCTCAGCCCTCTTGCGTGTGTCCTCCC11.8181818181818181No Hit
GTTGTGAACGCACAATTGATGCACTTCTGGATCTTTGATCAACTAATTTA11.8181818181818181No Hit
CATATTATCATCTCATTTGTGCCTTTAACAAACCTTTTGGGGTAACAATT11.8181818181818181No Hit
GTGGTGCATGTCTGTAATCCCAGCAACTTGGGAGGCTGAGGCAGGAGAAT11.8181818181818181No Hit
GTGACTTAAAACAACACAGATGTTTTACCTCACAGTTCTGTAACAGTTCA11.8181818181818181No Hit
GTACCGGCATCGGCCAGCGCGGGACATAGCGGCTTTCGAACGTGTGCGAT11.8181818181818181No Hit
GAGTTGAAACTTTCTTTTCATTGAGCAGTTTGGAAACAGTCTTTTCGTAG11.8181818181818181No Hit
TCTGTACATCACCATCATCAAAGACCAAAGGTAGATAAAACCACAAAGAT11.8181818181818181No Hit
CATCTTGTGCGCATAGTCAGGCGACAGCGAGAAGGCGGTAGCGGAGGCGA11.8181818181818181No Hit
ACTCATTGCTTTGGACATGGGCATATGACTCAGGGTGGATCAATTACTGT11.8181818181818181No Hit
GCGCAGGACAGCCTGTCGGCATTGCAAAGCGCCATCGATGCGGGTGCGAA11.8181818181818181No Hit
CCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAA11.8181818181818181No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA11.8181818181818181No Hit
GCACCATCGCGTGCACGGCGGCGACCTGATCTGGGAGATCGGCTCGGGCT11.8181818181818181No Hit
CCGTCCAGATCGGCATCACCCTGGGCGGCATCCTGACCGGCGTGTACGGC11.8181818181818181No Hit
GAAGTCCAAGAGCAAGGTGCTAGCAAGCCCTGTGTCTGGTGAGAGCCCAT11.8181818181818181No Hit
GCATCGAGGTAGGTGAGCTCAGAGAACTTGATGTCACAGATGATGGAGCC11.8181818181818181No Hit
GATCTGCCCCACGTGGCTGACTTGCTGCATCGCCGGCGTGCAGGCGAGAT11.8181818181818181No Hit
GAGCTGGGGATTGTCAGGAACAGAGAATATGCCATCATGGTGACTGTGAG11.8181818181818181No Hit
CCACTGACCCCATAAAAAAACACAAAAACCATCAAAAATACCATAAATAC11.8181818181818181No Hit
GCTTCTGAGGTCAAAATGTAACCAAAAACCCTTCTGTCTCTGGGGTAGGC11.8181818181818181No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)